nsv1110910
- Organism: Homo sapiens
- Study:nstd106 (Alsmadi et al. 2014)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:31,020
- Publication(s):Alsmadi et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 836 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 116 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 253 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 838 SVs from 60 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1110910 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 27,930,644 | 27,961,663 |
| nsv1110910 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 64,931 | 95,950 |
| nsv1110910 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 64,931 | 95,950 |
| nsv1110910 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 28,175,790 | 28,206,809 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3961326 | inversion | KWS1 | Sequencing | Read depth and paired-end mapping | 22,470 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3961326 | Remapped | Perfect | NT_187660.1:g.(649 31_?)_(?_95950)inv | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 64,931 | 95,950 |
| nssv3961326 | Remapped | Perfect | NW_011332701.1:g.( 64931_?)_(?_95950) inv | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 64,931 | 95,950 |
| nssv3961326 | Remapped | Perfect | NC_000015.10:g.(27 930644_?)_(?_27961 663)inv | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 27,930,644 | 27,961,663 |
| nssv3961326 | Submitted genomic | NC_000015.9:g.(281 75790_?)_(?_282068 09)inv | GRCh37 (hg19) | NC_000015.9 | Chr15 | 28,175,790 | 28,206,809 |