nsv1069376
- Organism: Homo sapiens
- Study:nstd99 (Thareja et al. 2015)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Thareja et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 96 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv1069376 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 138,099,790 | 138,099,790 | - |
| nsv1069376 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 121,337,966 | 121,337,966 | - |
| nsv1069376 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 137,435,479 | 137,435,479 | - | ||
| nsv1069376 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 124,100,244 | 124,100,244 | - |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3768237 | interchromosomal translocation | KWP1 | Sequencing | Read depth and paired-end mapping | 11,116 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv3768237 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 138,099,790 | 138,099,790 | - |
| nssv3768237 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 121,337,966 | 121,337,966 | - |
| nssv3768237 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 137,435,479 | 137,435,479 | - | ||
| nssv3768237 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 124,100,244 | 124,100,244 | - |