Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv1069375

Organism: Homo sapiens

Study:nstd99 (Thareja et al. 2015)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Thareja et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 105 SVs from 19 studies. See in: genome view

Remapped(Score: Perfect):134,643,594-134,643,594

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1069375	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	134,643,594	134,643,594	-
nsv1069375	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	74,073,647	74,073,647	-
nsv1069375	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	133,979,284	133,979,284	-
nsv1069375	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	73,784,692	73,784,692	-

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3765789	interchromosomal translocation	KWP1	Sequencing	Read depth and paired-end mapping	11,116

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv3765789	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	134,643,594	134,643,594	-
nssv3765789	Remapped	Perfect	GRCh38.p12	First Pass	NC_000011.10	Chr11	74,073,647	74,073,647	-
nssv3765789	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	133,979,284	133,979,284	-
nssv3765789	Submitted genomic		GRCh37 (hg19)		NC_000011.9	Chr11	73,784,692	73,784,692	-

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI