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dbVar

Database of genomic structural variation

nsv1069224

Organism: Homo sapiens

Study:nstd99 (Thareja et al. 2015)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Thareja et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 122 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):80,692,978-80,692,978

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1069224	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	80,692,978	80,692,978	not reported
nsv1069224	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	80,693,534	80,693,534	not reported
nsv1069224	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	79,988,797	79,988,797	not reported
nsv1069224	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	79,989,353	79,989,353	not reported

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3767873	intrachromosomal translocation	KWP1	Sequencing	Read depth and paired-end mapping	11,116

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv3767873	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	80,692,978	80,692,978	not reported
nssv3767873	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	80,693,534	80,693,534	not reported
nssv3767873	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	79,988,797	79,988,797	not reported
nssv3767873	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	79,989,353	79,989,353	not reported

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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