nsv1039022
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:19
- Validation:Not tested
- Clinical Assertions: No
- Region Size:131,409
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2723 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 2725 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 1521 SVs from 36 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1039022 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nsv1039022 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nsv1039022 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3537194 | copy number loss | SNP array | Probe signal intensity |
| nssv3537195 | copy number loss | SNP array | Probe signal intensity |
| nssv3537196 | copy number loss | SNP array | Probe signal intensity |
| nssv3537197 | copy number gain | SNP array | Probe signal intensity |
| nssv3537198 | copy number gain | SNP array | Probe signal intensity |
| nssv3537199 | copy number gain | SNP array | Probe signal intensity |
| nssv3537200 | copy number loss | SNP array | Probe signal intensity |
| nssv3537201 | copy number loss | SNP array | Probe signal intensity |
| nssv3537202 | copy number loss | SNP array | Probe signal intensity |
| nssv3537203 | copy number loss | SNP array | Probe signal intensity |
| nssv3537204 | copy number loss | SNP array | Probe signal intensity |
| nssv3537205 | copy number loss | SNP array | Probe signal intensity |
| nssv3714603 | copy number gain | SNP array | Probe signal intensity |
| nssv3714604 | copy number gain | SNP array | Probe signal intensity |
| nssv3714605 | copy number gain | SNP array | Probe signal intensity |
| nssv3714606 | copy number loss | SNP array | Probe signal intensity |
| nssv3714607 | copy number loss | SNP array | Probe signal intensity |
| nssv3714608 | copy number loss | SNP array | Probe signal intensity |
| nssv3714609 | copy number loss | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3537194 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537195 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537196 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537197 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537198 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537199 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537200 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537201 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537202 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537203 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537204 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537205 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3714603 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3714604 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3714605 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3714606 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3714607 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3714608 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3714609 | Remapped | Good | NC_000015.10:g.(?_ 20380723)_(2051213 1_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,380,723 | 20,512,131 |
| nssv3537194 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537195 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537196 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537197 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537198 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537199 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537200 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537201 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537202 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537203 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537204 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537205 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3714603 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3714604 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3714605 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3714606 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3714607 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3714608 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3714609 | Remapped | Perfect | NC_000015.9:g.(?_2 0585976)_(20717374 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 20,585,976 | 20,717,374 |
| nssv3537194 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537195 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537196 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537197 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)dup | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537198 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)dup | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537199 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)dup | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537200 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537201 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537202 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537203 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537204 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3537205 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3714603 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)dup | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3714604 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)dup | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3714605 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)dup | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3714606 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3714607 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3714608 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 | ||
| nssv3714609 | Submitted genomic | NC_000015.8:g.(?_1 8845990)_(18977388 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 18,845,990 | 18,977,388 |