nsv3318115
- Organism: Homo sapiens
- Study:nstd157 (Frenkel et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21,676
- Publication(s):Frenkel et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2884 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 2884 SVs from 97 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3318115 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,531,057 | 32,552,732 |
| nsv3318115 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 32,498,834 | 32,520,509 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14471995 | copy number loss | M2513 | SNP array | SNP genotyping analysis | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14471995 | Remapped | Perfect | NC_000006.12:g.(?_ 32531057)_(3255273 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,531,057 | 32,552,732 |
| nssv14471995 | Submitted genomic | NC_000006.11:g.(?_ 32498834)_(3252050 9_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 32,498,834 | 32,520,509 |