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dbVar

Database of genomic structural variation

esv990682

Organism: Homo sapiens

Study:estd180 (Pang et al. 2010)
Variant Type:inversion
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:20,491

Publication(s):Pang et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 165 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):44,688,138-44,708,628

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
esv990682	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	44,688,138	44,708,628
esv990682	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_009646197.1	Chr3\|NW_00 9646197.1	213,492	233,978
esv990682	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	44,729,630	44,750,120
esv990682	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	44,704,634	44,725,124

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv3565478	inversion	HuRef	Sequencing	Paired-end mapping	23,887

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
essv3565478	Remapped	Good	NW_009646197.1:g.( 213492_?)_(?_23397 8)inv20491	GRCh38.p12	Second Pass	NW_009646197.1	Chr3\|NW_00 9646197.1	213,492	233,978
essv3565478	Remapped	Perfect	NC_000003.12:g.(44 688138_?)_(?_44708 628)inv20491	GRCh38.p12	First Pass	NC_000003.12	Chr3	44,688,138	44,708,628
essv3565478	Remapped	Perfect	NC_000003.11:g.(44 729630_?)_(?_44750 120)inv20491	GRCh37.p13	First Pass	NC_000003.11	Chr3	44,729,630	44,750,120
essv3565478	Submitted genomic		NC_000003.10:g.(44 704634_?)_(?_44725 124)inv20491	NCBI36 (hg18)		NC_000003.10	Chr3	44,704,634	44,725,124

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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