esv4010575
- Organism: Homo sapiens
- Study:estd233 (Luo et al. 2017b)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:20,001
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 899 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 899 SVs from 79 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv4010575 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 1,582,354 | 1,602,354 |
| esv4010575 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 1,563,000 | 1,583,000 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| essv26066582 | copy number loss | hepG2 | Sequencing | Read depth and paired-end mapping | 0 | 1,026 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv26066582 | Remapped | Perfect | NC_000020.11:g.158 2354_1602354del200 00 | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,582,354 | 1,602,354 |
| essv26066582 | Submitted genomic | NC_000020.10:g.156 3000_1583000del200 00 | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,563,000 | 1,583,000 |