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dbVar

Database of genomic structural variation

esv3900981

Organism: Homo sapiens

Study:estd225 (Magnusson et al. 2016)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:449,896

Publication(s):Magnusson et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1553 SVs from 96 studies. See in: genome view

Remapped(Score: Perfect):25,128,545-25,578,440

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3900981	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	25,128,545	25,578,440
esv3900981	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	25,150,091	25,599,986

Variant Call Information

Variant Call ID	Type	Method	Analysis	Copy number
essv25821913	copy number loss	SNP array	SNP genotyping analysis	1
essv25821914	copy number loss	SNP array	SNP genotyping analysis	1

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv25821913	Remapped	Perfect	NC_000011.10:g.251 28545_25578440del	GRCh38.p12	First Pass	NC_000011.10	Chr11	25,128,545	25,578,440
essv25821914	Remapped	Perfect	NC_000011.10:g.251 28545_25578440del	GRCh38.p12	First Pass	NC_000011.10	Chr11	25,128,545	25,578,440
essv25821913	Submitted genomic		NC_000011.9:g.2515 0091_25599986del	GRCh37 (hg19)		NC_000011.9	Chr11	25,150,091	25,599,986
essv25821914	Submitted genomic		NC_000011.9:g.2515 0091_25599986del	GRCh37 (hg19)		NC_000011.9	Chr11	25,150,091	25,599,986

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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