esv3853
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:227,821
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2819 SVs from 102 studies. See in: genome view
Overlapping variant regions from other studies: 2129 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 5172 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 1132 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv3853 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 106,637,802 | - | - | 106,865,622 |
| esv3853 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 107,093,807 | - | - | 107,273,837 |
| esv3853 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | - | 746,715 | 1,440,762 | - |
| esv3853 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 106,164,852 | - | - | 106,344,882 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv26294 | sequence alteration | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| essv26294 | Remapped | Pass | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,637,802 | - | - | 106,865,622 |
| essv26294 | Remapped | Pass | GRCh37.p13 | Second Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | - | 746,715 | 1,440,762 | - |
| essv26294 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 107,093,807 | - | - | 107,273,837 |
| essv26294 | Submitted genomic | NCBI36 (hg18) | NC_000014.7 | Chr14 | 106,164,852 | - | - | 106,344,882 |