esv3671
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:367
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 243 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 70 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 59 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 80 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 255 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| esv3671 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 1,017,754 | - | 1,018,120 |
| esv3671 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_187681.1 | Chr11|NT_1 87681.1 | - | 92,297 | 92,513 |
| esv3671 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187656.1 | Chr11|NT_1 87656.1 | 85,291 | - | 85,657 |
| esv3671 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 5,211 | - | 5,577 |
| esv3671 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 1,017,754 | - | 1,018,120 |
| esv3671 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 1,007,754 | - | 1,008,120 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv26112 | complex substitution | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv26112 | Remapped | Pass | GRCh38.p12 | Second Pass | NT_187681.1 | Chr11|NT_1 87681.1 | - | 92,297 | 92,513 |
| essv26112 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187656.1 | Chr11|NT_1 87656.1 | 85,291 | - | 85,657 |
| essv26112 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 5,211 | - | 5,577 |
| essv26112 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 1,017,754 | - | 1,018,120 |
| essv26112 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 1,017,754 | - | 1,018,120 |
| essv26112 | Submitted genomic | NCBI36 (hg18) | NC_000011.8 | Chr11 | 1,007,754 | - | 1,008,120 |