Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv29963

Organism: Homo sapiens

Study:estd22 (Levy et al. 2007)
Variant Type:copy number variation
Method Type:Oligo aCGH, SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:16,090

Publication(s):Levy et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 595 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):143,538,013-143,554,102

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv29963	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	143,538,013	143,554,102
esv29963	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187571.1	Chr8\|NT_18 7571.1	28,053	44,142
esv29963	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	144,620,183	144,636,272
esv29963	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	144,691,326	144,707,415

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv84202	copy number loss	HuRef	Oligo aCGH, SNP array	Probe signal intensity, SNP genotyping analysis	780,358

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv84202	Remapped	Perfect	NT_187571.1:g.(?_2 8053)_(44142_?)del	GRCh38.p12	Second Pass	NT_187571.1	Chr8\|NT_18 7571.1	28,053	44,142
essv84202	Remapped	Perfect	NC_000008.11:g.(?_ 143538013)_(143554 102_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	143,538,013	143,554,102
essv84202	Remapped	Perfect	NC_000008.10:g.(?_ 144620183)_(144636 272_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	144,620,183	144,636,272
essv84202	Submitted genomic		NC_000008.9:g.(?_1 44691326)_(1447074 15_?)del	NCBI36 (hg18)		NC_000008.9	Chr8	144,691,326	144,707,415

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI