esv2796
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:66
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 546 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 658 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 301 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2796 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 148,303,473 | 148,303,538 |
| esv2796 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 147,775,580 | 147,775,645 |
| esv2796 | Remapped | Perfect | GRCh37.p13 | PATCHES | Second Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 5,118,886 | 5,118,951 |
| esv2796 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 146,242,204 | 146,242,269 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv25237 | inversion | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25237 | Remapped | Perfect | NC_000001.11:g.(14 8303473_?)_(?_1483 03538)inv | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 148,303,473 | 148,303,538 |
| essv25237 | Remapped | Perfect | NW_003871055.3:g.( 5118886_?)_(?_5118 951)inv | GRCh37.p13 | Second Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 5,118,886 | 5,118,951 |
| essv25237 | Remapped | Perfect | NC_000001.10:g.(14 7775580_?)_(?_1477 75645)inv | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 147,775,580 | 147,775,645 |
| essv25237 | Submitted genomic | NC_000001.9:g.(146 242204_?)_(?_14624 2269)inv | NCBI36 (hg18) | NC_000001.9 | Chr1 | 146,242,204 | 146,242,269 |