esv275523
- Organism: Homo sapiens
- Study:estd176 (Banerjee et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,685
- Publication(s):Banerjee et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 97 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 24 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv275523 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 154,465,231 | 154,465,433 | 154,465,491 | 154,476,915 |
| esv275523 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 153,844,791 | 153,844,993 | 153,845,051 | 153,856,475 |
| esv275523 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 153,824,984 | 153,825,186 | 153,825,244 | 153,836,668 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv2585704 | copy number loss | SNP array | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv2585704 | Remapped | Perfect | NC_000005.10:g.(15 4465231_154465433) _(154465491_154476 915)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 154,465,231 | 154,465,433 | 154,465,491 | 154,476,915 |
| essv2585704 | Remapped | Perfect | NC_000005.9:g.(153 844791_153844993)_ (153845051_1538564 75)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 153,844,791 | 153,844,993 | 153,845,051 | 153,856,475 |
| essv2585704 | Submitted genomic | NC_000005.8:g.(153 824984_153825186)_ (153825244_1538366 68)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 153,824,984 | 153,825,186 | 153,825,244 | 153,836,668 |