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esv2656115

  • Variant Calls:2
  • Validation:Yes
  • Clinical Assertions: No
  • Region Size:10,614

Links to Other Resources

Source: NCBI

Genome View

Select assembly:
Overlapping variant regions from other studies: 809 SVs from 60 studies. See in: genome view    
Remapped(Score: Perfect):79,013,973-79,019,152Question Mark
Overlapping variant regions from other studies: 127 SVs from 37 studies. See in: genome view    
Remapped(Score: Pass):79,088-88,139Question Mark
Overlapping variant regions from other studies: 128 SVs from 37 studies. See in: genome view    
Remapped(Score: Pass):79,089-89,702Question Mark
Overlapping variant regions from other studies: 809 SVs from 60 studies. See in: genome view    
Remapped(Score: Perfect):76,773,973-76,779,152Question Mark
Overlapping variant regions from other studies: 380 SVs from 24 studies. See in: genome view    
Submitted genomic74,874,961-74,880,140Question Mark

Variant Region Placement Information

Variant Region IDPlacement TypeScoreAssemblyAssembly UnitReciprocitySequence IDChrInner StartInner Stop
esv2656115RemappedPerfectGRCh38.p12Primary AssemblyFirst PassNC_000018.10Chr1879,013,97379,019,152
esv2656115RemappedPassGRCh38.p12ALT_REF_LOCI_2Second PassNT_187666.1Chr18|NT_1
87666.1
79,08888,139
esv2656115RemappedPassGRCh38.p12ALT_REF_LOCI_1Second PassNW_003315961.1Chr18|NW_0
03315961.1
79,08989,702
esv2656115RemappedPerfectGRCh37.p13Primary AssemblyFirst PassNC_000018.9Chr1876,773,97376,779,152
esv2656115Submitted genomicNCBI36 (hg18)Primary AssemblyNC_000018.8Chr1874,874,96174,880,140

Variant Call Information

Variant Call IDTypeSample IDMethodAnalysisCopy numberOther Calls in this Sample and Study
essv5395421copy number loss2377 [55]SNP arraySNP genotyping analysis15
essv5395249copy number loss2311 [10]SNP arraySNP genotyping analysis19

Variant Call Placement Information

Variant Call IDPlacement TypeScoreHGVSAssemblyReciprocitySequence IDChrInner StartInner Stop
essv5395421RemappedPassNT_187666.1:g.(?_7
9088)_(88139_?)del
GRCh38.p12Second PassNT_187666.1Chr18|NT_1
87666.1
79,08888,139
essv5395249RemappedPassNT_187666.1:g.(?_7
9768)_(86130_?)del
GRCh38.p12Second PassNT_187666.1Chr18|NT_1
87666.1
79,76886,130
essv5395421RemappedPassNW_003315961.1:g.(
?_79089)_(89702_?)
del
GRCh38.p12Second PassNW_003315961.1Chr18|NW_0
03315961.1
79,08989,702
essv5395249RemappedPassNW_003315961.1:g.(
?_79769)_(87692_?)
del
GRCh38.p12Second PassNW_003315961.1Chr18|NW_0
03315961.1
79,76987,692
essv5395421RemappedPerfectNC_000018.10:g.(?_
79013973)_(7901915
2_?)del
GRCh38.p12First PassNC_000018.10Chr1879,013,97379,019,152
essv5395249RemappedPerfectNC_000018.10:g.(?_
79014653)_(7901714
3_?)del
GRCh38.p12First PassNC_000018.10Chr1879,014,65379,017,143
essv5395421RemappedPerfectNC_000018.9:g.(?_7
6773973)_(76779152
_?)del
GRCh37.p13First PassNC_000018.9Chr1876,773,97376,779,152
essv5395249RemappedPerfectNC_000018.9:g.(?_7
6774653)_(76777143
_?)del
GRCh37.p13First PassNC_000018.9Chr1876,774,65376,777,143
essv5395421Submitted genomicNC_000018.8:g.(?_7
4874961)_(74880140
_?)del
NCBI36 (hg18)NC_000018.8Chr1874,874,96174,880,140
essv5395249Submitted genomicNC_000018.8:g.(?_7
4875641)_(74878131
_?)del
NCBI36 (hg18)NC_000018.8Chr1874,875,64174,878,131

Validation Information

Variant Call IDExperiment IDSample IDMethodAnalysisResult
essv539524922311 [10]KaryotypingManual observationPass
essv539542122377 [55]KaryotypingManual observationPass

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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