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dbVar

Database of genomic structural variation

esv3812910

Organism: Homo sapiens

Study:estd192 (COSMIC)
Variant Type:complex substitution
Method Type:Curated
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1

Description:
Chr3:g.102105278_111999093>chr2:124347458_124347498
Publication(s):Forbes et al. 2008, Forbes et al. 2008, Pleasance et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view

Remapped(Score: Perfect):123,589,882-123,589,882

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3812910	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	123,589,882	123,589,882
esv3812910	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	123,589,922	123,589,922
esv3812910	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	102,386,434	102,386,434
esv3812910	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	112,280,246	112,280,246
esv3812910	Remapped	Perfect	GRCh38.p12	PATCHES	Second Pass	NW_019805492.1	Chr3\|NW_01 9805492.1	172,984	172,984
esv3812910	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	124,347,458	124,347,458
esv3812910	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	124,347,498	124,347,498
esv3812910	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	102,105,278	102,105,278
esv3812910	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	111,999,093	111,999,093

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv16612214	interchromosomal translocation	688013	Curated	Curated	58
essv16639675	interchromosomal translocation	688013	Curated	Curated	58

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
essv16612214	Remapped	Perfect	GRCh38.p12	First Pass	NC_000002.12	Chr2	123,589,882	123,589,882	not reported
essv16639675	Remapped	Perfect	GRCh38.p12	First Pass	NC_000002.12	Chr2	123,589,922	123,589,922	not reported
essv16639675	Remapped	Perfect	GRCh38.p12	Second Pass	NW_019805492.1	Chr3\|NW_01 9805492.1	172,984	172,984	not reported
essv16612214	Remapped	Perfect	GRCh38.p12	First Pass	NC_000003.12	Chr3	102,386,434	102,386,434	not reported
essv16639675	Remapped	Perfect	GRCh38.p12	First Pass	NC_000003.12	Chr3	112,280,246	112,280,246	not reported
essv16612214	Submitted genomic		GRCh37 (hg19)		NC_000002.11	Chr2	124,347,458	124,347,458	not reported
essv16639675	Submitted genomic		GRCh37 (hg19)		NC_000002.11	Chr2	124,347,498	124,347,498	not reported
essv16612214	Submitted genomic		GRCh37 (hg19)		NC_000003.11	Chr3	102,105,278	102,105,278	not reported
essv16639675	Submitted genomic		GRCh37 (hg19)		NC_000003.11	Chr3	111,999,093	111,999,093	not reported

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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