nstd73 (Dogan et al. 2014)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Haluk Dogan
- Description:
- In this study we have sequenced the whole genome of an anonymous healthy male Turkish individual with high coverage (~35x). Resulting high quality data represented ~1.18 billion paired-end reads accounting for ~116,720 M bp. The structural variations (SV) submitted in this entry have been identified using paired-end and read-depth based SV calling algorithms. See Variant Summary counts for nstd73 in dbVar Variant Summary.
- Project:
- PRJNA171612
- Publication(s):
- Dogan et al. 2014
Detailed Information: Download 9109 Variant Regions, Download 9109 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 678 | 678 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 729 | 729 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 460 | 460 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 594 | 594 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 484 | 484 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 454 | 454 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 575 | 575 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 346 | 346 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 477 | 477 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 403 | 403 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 425 | 425 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 340 | 340 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 233 | 233 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 272 | 272 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 273 | 273 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 343 | 343 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 314 | 314 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 206 | 206 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 299 | 299 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 217 | 217 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 181 | 181 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 181 | 181 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 161 | 161 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 156 | 156 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 2 | 2 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 9 | 9 | Remapped | NT_187361.1 |
| NT_187514.1 | Chr1|NT_187514.1 | 1 | 1 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 3 | 3 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 2 | 2 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 1 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 4 | 4 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 1 | 1 | Remapped | NT_187520.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 1 | Remapped | NT_187646.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 1 | 1 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 1 | 1 | Remapped | NW_009646194.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 1 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 2 | 2 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 4 | 4 | Remapped | NW_012132914.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 4 | 4 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 2 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 1 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 1 | 1 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 2 | 2 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 1 | 1 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 1 | 1 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 1 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 2 | 2 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 4 | 4 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 2 | 2 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 2 | 2 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 6 | 6 | Remapped | NT_187648.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 1 | 1 | Remapped | NW_003571033.2 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 5 | 5 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 2 | 2 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 12 | 12 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 3 | 3 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 8 | 8 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 7 | 7 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 8 | 8 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 8 | 8 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 7 | 7 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 6 | 6 | Remapped | NT_187532.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 1 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 5 | 5 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 7 | 7 | Remapped | NT_187649.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 1 | 1 | Remapped | NW_009646198.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 2 | 2 | Remapped | NW_011332691.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 1 | 1 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 1 | 1 | Remapped | NW_018654711.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 3 | 3 | Remapped | NW_019805490.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 11 | 11 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 7 | 7 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 2 | 2 | Remapped | NT_187540.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 6 | 6 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 2 | 2 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 8 | 8 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 1 | 1 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 1 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 2 | 2 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 1 | 1 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 1 | 1 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 4 | 4 | Remapped | NW_003315917.2 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 1 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 3 | 3 | Remapped | NW_016107298.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 6 | 6 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 3 | 3 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 2 | 2 | Remapped | NT_187555.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 1 | 1 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 2 | 2 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 2 | 2 | Remapped | NW_012132918.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 2 | 2 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 5 | 5 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 2 | 2 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 7 | 7 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 1 | 1 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 1 | 1 | Remapped | NT_187564.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 1 | Remapped | NW_017852929.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 5 | 5 | Remapped | NW_018654714.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 4 | 4 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 4 | 4 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 5 | 5 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 2 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 4 | 4 | Remapped | NT_187568.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 1 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 2 | 2 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 1 | 1 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 1 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 10 | 10 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 1 | 1 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 4 | 4 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 1 | 1 | Remapped | NT_187655.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 17 | 17 | Remapped | NW_018654717.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 1 | 1 | Remapped | NW_003315929.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 1 | 1 | Remapped | NW_009646201.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 8 | 8 | Remapped | NT_187579.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 1 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 1 | 1 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 4 | 4 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 3 | 3 | Remapped | NT_187656.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 1 | 1 | Remapped | NT_187581.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 1 | 1 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 1 | 1 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 3 | 3 | Remapped | NT_187586.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 2 | 2 | Remapped | NW_009646203.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 5 | 5 | Remapped | NW_015148966.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 1 | 1 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 2 | Remapped | NT_187658.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 2 | 2 | Remapped | NT_187589.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 1 | Remapped | NW_003315941.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 4 | 4 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 2 | 2 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 1 | 1 | Remapped | NW_011332696.1 |
| NW_011332697.1 | Chr12|NW_011332697.1 | 1 | 1 | Remapped | NW_011332697.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 2 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 2 | 2 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 3 | 3 | Remapped | NW_018654718.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 3 | 3 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 2 | 2 | Remapped | NT_187592.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 2 | 2 | Remapped | NT_187594.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 2 | 2 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 7 | 7 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 3 | 3 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 2 | 2 | Remapped | NW_011332700.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 2 | 2 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 6 | 6 | Remapped | NT_113796.3 |
| NT_187599.1 | Chr14|NT_187599.1 | 2 | 2 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 12 | 12 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 4 | 4 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 1 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 3 | 3 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 2 | 2 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 15 | 15 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 1 | 1 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 2 | 2 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 2 | 2 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 4 | 4 | Remapped | NT_187604.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 2 | 2 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 6 | 6 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 15 | 15 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 9 | 9 | Remapped | NT_187607.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 1 | 1 | Remapped | NT_187610.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 2 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 3 | 3 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 4 | 4 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 13 | 13 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 3 | 3 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 1 | 1 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 3 | 3 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 4 | 4 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 18 | 18 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 6 | 6 | Remapped | NW_003315952.3 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 2 | 2 | Remapped | NW_003315955.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 4 | 4 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 1 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 2 | 2 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 1 | 1 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 1 | 1 | Remapped | NT_187617.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 2 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 2 | 2 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 1 | Remapped | NW_003315961.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 1 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 14 | 14 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 7 | 7 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 5 | 5 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 5 | 5 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 5 | 5 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 6 | 6 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 5 | 5 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 6 | 6 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 1 | 1 | Remapped | NT_187619.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 1 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 1 | 1 | Remapped | NT_187622.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 3 | 3 | Remapped | NW_003315964.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 8 | 8 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 2 | 2 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 3 | 3 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 1 | 1 | Remapped | NT_187623.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 2 | 2 | Remapped | NT_187628.1 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 1 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 2 | 2 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 1 | 1 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 2 | 2 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 4 | 4 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 2 | 2 | Remapped | NT_187667.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 2 | 2 | Remapped | NT_187634.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 7 | 7 | Remapped | NW_009646209.1 |
| NW_018654725.1 | ChrY|NW_018654725.1 | 1 | 1 | Remapped | NW_018654725.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 745 | 745 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 753 | 753 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 464 | 464 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 602 | 602 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 490 | 490 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 465 | 465 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 592 | 592 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 352 | 352 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 511 | 511 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 417 | 417 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 433 | 433 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 348 | 348 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 238 | 238 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 275 | 275 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 283 | 283 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 348 | 348 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 323 | 323 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 215 | 215 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 311 | 311 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 221 | 221 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 187 | 187 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 189 | 189 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 179 | 179 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 168 | 168 | Submitted | NC_000024.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 745 | 601 | 62 | 18 | 39 | 25 | 745 | 601 | 62 | 18 | 39 | 25 |
| NC_000002.11 | Chr2 | 753 | 666 | 20 | 11 | 18 | 38 | 753 | 666 | 20 | 11 | 18 | 38 |
| NC_000003.11 | Chr3 | 464 | 434 | 2 | 2 | 5 | 21 | 464 | 434 | 2 | 2 | 5 | 21 |
| NC_000004.11 | Chr4 | 602 | 561 | 9 | 3 | 8 | 21 | 602 | 561 | 9 | 3 | 8 | 21 |
| NC_000005.9 | Chr5 | 490 | 470 | 0 | 0 | 6 | 14 | 490 | 470 | 0 | 0 | 6 | 14 |
| NC_000006.11 | Chr6 | 465 | 428 | 5 | 4 | 10 | 18 | 465 | 428 | 5 | 4 | 10 | 18 |
| NC_000007.13 | Chr7 | 592 | 531 | 18 | 5 | 15 | 23 | 592 | 531 | 18 | 5 | 15 | 23 |
| NC_000008.10 | Chr8 | 352 | 285 | 7 | 5 | 3 | 52 | 352 | 285 | 7 | 5 | 3 | 52 |
| NC_000009.11 | Chr9 | 511 | 448 | 13 | 13 | 32 | 5 | 511 | 448 | 13 | 13 | 32 | 5 |
| NC_000010.10 | Chr10 | 417 | 382 | 5 | 6 | 14 | 10 | 417 | 382 | 5 | 6 | 14 | 10 |
| NC_000011.9 | Chr11 | 433 | 403 | 5 | 1 | 8 | 16 | 433 | 403 | 5 | 1 | 8 | 16 |
| NC_000012.11 | Chr12 | 348 | 315 | 1 | 2 | 8 | 22 | 348 | 315 | 1 | 2 | 8 | 22 |
| NC_000013.10 | Chr13 | 238 | 217 | 1 | 2 | 3 | 15 | 238 | 217 | 1 | 2 | 3 | 15 |
| NC_000014.8 | Chr14 | 275 | 242 | 6 | 2 | 3 | 22 | 275 | 242 | 6 | 2 | 3 | 22 |
| NC_000015.9 | Chr15 | 283 | 248 | 1 | 1 | 8 | 25 | 283 | 248 | 1 | 1 | 8 | 25 |
| NC_000016.9 | Chr16 | 348 | 326 | 0 | 4 | 5 | 13 | 348 | 326 | 0 | 4 | 5 | 13 |
| NC_000017.10 | Chr17 | 323 | 254 | 11 | 4 | 4 | 50 | 323 | 254 | 11 | 4 | 4 | 50 |
| NC_000018.9 | Chr18 | 215 | 196 | 1 | 0 | 7 | 9 | 215 | 196 | 1 | 0 | 7 | 9 |
| NC_000019.9 | Chr19 | 311 | 275 | 10 | 2 | 5 | 19 | 311 | 275 | 10 | 2 | 5 | 19 |
| NC_000020.10 | Chr20 | 221 | 212 | 2 | 2 | 4 | 1 | 221 | 212 | 2 | 2 | 4 | 1 |
| NC_000021.8 | Chr21 | 187 | 166 | 7 | 3 | 6 | 5 | 187 | 166 | 7 | 3 | 6 | 5 |
| NC_000022.10 | Chr22 | 189 | 155 | 17 | 2 | 6 | 9 | 189 | 155 | 17 | 2 | 6 | 9 |
| NC_000023.10 | ChrX | 179 | 152 | 0 | 7 | 18 | 2 | 179 | 152 | 0 | 7 | 18 | 2 |
| NC_000024.9 | ChrY | 168 | 145 | 0 | 4 | 12 | 7 | 168 | 145 | 0 | 4 | 12 | 7 |
Samplesets
Number of Samplesets: 1
- Name:
- BILGI
- Size:
- 1
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Male
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN01096093 | whole blood | BILGI_BIOE | Male | Turkish | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Read depth | Illumina HiSeq 2000 | 4,726 |
| 2 | Discovery | Sequencing | Paired-end mapping | Illumina HiSeq 2000 | 4,383 |