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nstd191 (Dai et al. 2021)

Organism:
Human
Study Type:
Case-Set
Submitter:
Pidong Li
Description:
Duchenne muscular dystrophy (DMD) is caused by mutations in the dystrophin-encoding DMD gene. The RNA-seq and cDNA capture sequencing showed a complete absence of transcripts of exons 3-55. Optical mapping identified a 55Mb pericentric inversion between Xp21 and Xq21. Subsequently, the whole genome sequencing (WGS) using the nanopore-based long-read sequencing determined the exact inversion breakpoints at 32,915,769 and 87,989,324 of X chromosome. See Variant Summary counts for nstd191 in dbVar Variant Summary.
Publication(s):
Dai et al. 2021

Detailed Information: Download 1 Variant Region, Download 1 Variant Call, Download Both, FTP

Variant Summary

Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000023.11ChrX11SubmittedNC_000023.11
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000023.10ChrX11RemappedNC_000023.10

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000023.11ChrX101000101000

Samplesets

Number of Samplesets: 1

Sampleset Type:
Case
Size:
1
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
Sex:
Male
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDSubject ID SexEthnicitySubject Phenotype
    DMD001DMD001MaleEast AsianNot reported

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsNumber of Variant Calls
    1DiscoverySequencingSequence alignmentNanopore1

    Validations

    No validation data were submitted for this study.

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