nstd175 (Genome in a Bottle)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Justin Zook
- Submitter version:
- v0.6
- Description:
- The v0.6 Genome in a Bottle Consortium [www.genomeinabottle.org] structural variant (SV) benchmark set includes ~10,000 sequence-resolved insertions and deletions >49bp from the broadly-consented GIAB/Personal Genome Project Ashkenazi son (HG002/GM24385). These SVs, along with an accompanying benchmark BED file, are discovered and evaluated by multiple short, linked, and long read sequencing technologies and are intended as a benchmark for identifying false positive and false negative SV calls in any method. Original VCF files and the benchmark BED file can be found here. See Variant Summary counts for nstd175 in dbVar Variant Summary.
- Project:
- PRJNA200694
- Publication(s):
- Genome in a Bottle
Detailed Information: Download 12745 Variant Regions, Download 12745 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 951 | 951 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 959 | 959 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 745 | 745 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 883 | 883 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 689 | 689 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 782 | 782 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 768 | 768 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 692 | 692 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 506 | 506 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 644 | 644 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 593 | 593 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 624 | 624 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 525 | 525 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 349 | 349 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 312 | 312 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 365 | 365 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 438 | 438 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 337 | 337 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 404 | 404 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 362 | 362 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 228 | 228 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 235 | 235 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 297 | 297 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 8 | 8 | Remapped | NC_000024.10 |
| NT_187515.1 | Chr1|NT_187515.1 | 5 | 5 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 6 | 6 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 2 | 2 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 4 | 4 | Remapped | NT_187519.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 2 | 2 | Remapped | NT_187646.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 1 | 1 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 2 | 2 | Remapped | NW_009646194.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 1 | 1 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 2 | 2 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 2 | 2 | Remapped | NW_011332688.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 1 | 1 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 2 | 2 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 2 | 2 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 2 | 2 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 1 | 1 | Remapped | NW_018654706.1 |
| NW_019805487.1 | Chr1|NW_019805487.1 | 1 | 1 | Remapped | NW_019805487.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 2 | 2 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 3 | 3 | Remapped | NT_187523.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 4 | 4 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 1 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 4 | 4 | Remapped | NT_187527.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 5 | 5 | Remapped | NT_187529.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 1 | 1 | Remapped | NT_187531.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 3 | 3 | Remapped | NT_187647.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 2 | 2 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 1 | Remapped | NW_003315909.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 3 | 3 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 4 | 4 | Remapped | NW_011332690.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 3 | 3 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 5 | 5 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 5 | 5 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 7 | 7 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 4 | 4 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 4 | 4 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 7 | 7 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 1 | 1 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 1 | 1 | Remapped | NT_187534.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 1 | 1 | Remapped | NT_187538.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 5 | 5 | Remapped | NT_187649.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 1 | 1 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 3 | 3 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 1 | 1 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 2 | 2 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 2 | 2 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 1 | 1 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 2 | 2 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 2 | 2 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 1 | 1 | Remapped | NW_019805490.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 2 | 2 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 12 | 12 | Remapped | NT_187679.1 |
| NT_187540.1 | Chr4|NT_187540.1 | 3 | 3 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 2 | 2 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 2 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 4 | 4 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 3 | 3 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 4 | 4 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 1 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 2 | 2 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 2 | 2 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 2 | 2 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 4 | 4 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 5 | 5 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 4 | 4 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 3 | 3 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 3 | 3 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 1 | 1 | Remapped | NW_003315918.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 2 | 2 | Remapped | NW_003315920.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 3 | 3 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 7 | 7 | Remapped | NW_016107298.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 3 | 3 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 5 | 5 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 1 | 1 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 1 | 1 | Remapped | NT_187557.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 1 | 1 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 10 | 10 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 1 | 1 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 2 | 2 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 2 | 2 | Remapped | NW_013171802.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 1 | 1 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 4 | 4 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 18 | 18 | Remapped | NT_187560.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 2 | 2 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 2 | 2 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 2 | 2 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 6 | 6 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 1 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 1 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 6 | 6 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 21 | 21 | Remapped | NT_187565.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 2 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 15 | 15 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 2 | 2 | Remapped | NT_187569.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 1 | 1 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 5 | 5 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 2 | 2 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 6 | 6 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 17 | 17 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 4 | 4 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 13 | 13 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 3 | 3 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 1 | Remapped | NW_017852931.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 7 | 7 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 27 | 27 | Remapped | NW_018654717.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 1 | 1 | Remapped | NT_187578.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 1 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 3 | 3 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 1 | Remapped | NW_013171804.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 2 | 2 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 1 | 1 | Remapped | NW_003315935.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 6 | 6 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 4 | 4 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 3 | 3 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 4 | 4 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 2 | 2 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 3 | 3 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 1 | 1 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 7 | 7 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 2 | 2 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 1 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 6 | 6 | Remapped | NW_015148966.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 2 | 2 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 2 | 2 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 4 | 4 | Remapped | NT_187658.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 2 | 2 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 1 | 1 | Remapped | NT_187590.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 1 | 1 | Remapped | NT_187591.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 2 | 2 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 3 | 3 | Remapped | NW_003315940.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 2 | 2 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 4 | 4 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 3 | 3 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 2 | Remapped | NW_013171809.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 8 | 8 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 3 | 3 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 1 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 2 | 2 | Remapped | NT_187592.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 3 | 3 | Remapped | NT_187595.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 4 | 4 | Remapped | NT_187596.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 1 | 1 | Remapped | NT_187597.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 1 | 1 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 13 | 13 | Remapped | NW_011332698.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 2 | 2 | Remapped | NW_011332700.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 1 | 1 | Remapped | NW_013171811.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 4 | 4 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 2 | 2 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 5 | 5 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 6 | 6 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 1 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 6 | 6 | Remapped | NW_018654722.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 6 | 6 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 1 | 1 | Remapped | NT_187603.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 1 | 1 | Remapped | NT_187606.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 2 | 2 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 6 | 6 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 3 | 3 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 1 | 1 | Remapped | NT_187608.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 5 | 5 | Remapped | NT_187610.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 1 | Remapped | NW_003315946.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 1 | 1 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 3 | 3 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 3 | 3 | Remapped | NW_019805500.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 13 | 13 | Remapped | NT_187662.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 6 | 6 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 2 | 2 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 9 | 9 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 11 | 11 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 10 | 10 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 1 | 1 | Remapped | NT_187615.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 2 | 2 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 16 | 16 | Remapped | NW_003315952.3 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 2 | 2 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 3 | 3 | Remapped | NW_003871091.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 10 | 10 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 2 | 2 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 2 | 2 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 6 | 6 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 6 | 6 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 4 | 4 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 6 | 6 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 1 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 7 | 7 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 5 | 5 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 1 | 1 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 1 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 15 | 15 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 10 | 10 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 9 | 9 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 9 | 9 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 9 | 9 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 12 | 12 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 9 | 9 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 12 | 12 | Remapped | NW_003571055.2 |
| NT_187622.1 | Chr19|NT_187622.1 | 5 | 5 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 1 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 1 | 1 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 1 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 9 | 9 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 1 | 1 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 5 | 5 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 7 | 7 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 6 | 6 | Remapped | NT_187624.1 |
| NT_187625.1 | Chr20|NT_187625.1 | 2 | 2 | Remapped | NT_187625.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 1 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 6 | 6 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 2 | 2 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 2 | 2 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 2 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 2 | 2 | Remapped | NW_003315969.2 |
| NT_187629.1 | Chr22|NT_187629.1 | 1 | 1 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 2 | 2 | Remapped | NT_187631.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 1 | 1 | Remapped | NW_017363820.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 1 | 1 | Remapped | NT_187635.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 1 | 1 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 953 | 953 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 961 | 961 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 746 | 746 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 884 | 884 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 689 | 689 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 783 | 783 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 770 | 770 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 698 | 698 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 507 | 507 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 645 | 645 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 594 | 594 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 625 | 625 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 526 | 526 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 354 | 354 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 312 | 312 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 365 | 365 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 443 | 443 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 337 | 337 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 412 | 412 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 363 | 363 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 229 | 229 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 238 | 238 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 303 | 303 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 8 | 8 | Submitted | NC_000024.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 953 | 913 | 1 | 3 | 2 | 34 | 953 | 913 | 1 | 3 | 2 | 34 |
| NC_000002.11 | Chr2 | 961 | 923 | 2 | 0 | 2 | 34 | 961 | 923 | 2 | 0 | 2 | 34 |
| NC_000003.11 | Chr3 | 746 | 718 | 0 | 0 | 1 | 27 | 746 | 718 | 0 | 0 | 1 | 27 |
| NC_000004.11 | Chr4 | 884 | 853 | 1 | 0 | 1 | 29 | 884 | 853 | 1 | 0 | 1 | 29 |
| NC_000005.9 | Chr5 | 689 | 656 | 0 | 0 | 0 | 33 | 689 | 656 | 0 | 0 | 0 | 33 |
| NC_000006.11 | Chr6 | 783 | 753 | 0 | 0 | 1 | 29 | 783 | 753 | 0 | 0 | 1 | 29 |
| NC_000007.13 | Chr7 | 770 | 732 | 0 | 3 | 2 | 33 | 770 | 732 | 0 | 3 | 2 | 33 |
| NC_000008.10 | Chr8 | 698 | 577 | 0 | 0 | 3 | 118 | 698 | 577 | 0 | 0 | 3 | 118 |
| NC_000009.11 | Chr9 | 507 | 502 | 0 | 0 | 0 | 5 | 507 | 502 | 0 | 0 | 0 | 5 |
| NC_000010.10 | Chr10 | 645 | 640 | 0 | 1 | 1 | 3 | 645 | 640 | 0 | 1 | 1 | 3 |
| NC_000011.9 | Chr11 | 594 | 558 | 0 | 0 | 1 | 35 | 594 | 558 | 0 | 0 | 1 | 35 |
| NC_000012.11 | Chr12 | 625 | 590 | 1 | 0 | 1 | 33 | 625 | 590 | 1 | 0 | 1 | 33 |
| NC_000013.10 | Chr13 | 526 | 500 | 0 | 0 | 0 | 26 | 526 | 500 | 0 | 0 | 0 | 26 |
| NC_000014.8 | Chr14 | 354 | 325 | 1 | 1 | 4 | 23 | 354 | 325 | 1 | 1 | 4 | 23 |
| NC_000015.9 | Chr15 | 312 | 302 | 0 | 0 | 0 | 10 | 312 | 302 | 0 | 0 | 0 | 10 |
| NC_000016.9 | Chr16 | 365 | 346 | 0 | 0 | 0 | 19 | 365 | 346 | 0 | 0 | 0 | 19 |
| NC_000017.10 | Chr17 | 443 | 373 | 0 | 0 | 1 | 69 | 443 | 373 | 0 | 0 | 1 | 69 |
| NC_000018.9 | Chr18 | 337 | 308 | 0 | 0 | 0 | 29 | 337 | 308 | 0 | 0 | 0 | 29 |
| NC_000019.9 | Chr19 | 412 | 379 | 0 | 1 | 3 | 29 | 412 | 379 | 0 | 1 | 3 | 29 |
| NC_000020.10 | Chr20 | 363 | 345 | 1 | 0 | 1 | 16 | 363 | 345 | 1 | 0 | 1 | 16 |
| NC_000021.8 | Chr21 | 229 | 214 | 0 | 0 | 1 | 14 | 229 | 214 | 0 | 0 | 1 | 14 |
| NC_000022.10 | Chr22 | 238 | 230 | 1 | 0 | 3 | 4 | 238 | 230 | 1 | 0 | 3 | 4 |
| NC_000023.10 | ChrX | 303 | 295 | 0 | 0 | 6 | 2 | 303 | 295 | 0 | 0 | 6 | 2 |
| NC_000024.9 | ChrY | 8 | 7 | 0 | 0 | 0 | 1 | 8 | 7 | 0 | 0 | 0 | 1 |
Samplesets
Number of Samplesets: 1
- Name:
- HG002
- Size:
- 1
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|
| SAMN03283347 | GM24385 | Male | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Sequence alignment | 12,745 |