nstd167 (Wenger et al. 2019)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Aaron Wenger
- Description:
- PacBio Circular Consensus Sequencing (CCS) of the human male HG002/NA24385 to evaluate the ability of highly-accurate long-read sequencing to identify small and large variants, to phase variants into haplotypes, and to assemble a genome de novo. See Variant Summary counts for nstd167 in dbVar Variant Summary.
- Project:
- PRJNA520771
- Publication(s):
- Wenger et al. 2019
Detailed Information: Download 30218 Variant Regions, Download 30634 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p13 (hg38)
Submitted: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 2,220 | 2,250 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 2,181 | 2,205 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 1,646 | 1,664 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 1,923 | 1,942 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 1,639 | 1,653 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 1,777 | 1,797 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 1,824 | 1,845 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 1,490 | 1,508 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 1,159 | 1,184 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 1,557 | 1,580 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 1,362 | 1,393 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 1,439 | 1,460 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 1,136 | 1,156 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 849 | 862 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 747 | 760 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 1,034 | 1,044 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 1,069 | 1,087 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 864 | 878 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 965 | 982 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 817 | 835 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 584 | 594 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 617 | 632 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 996 | 1,000 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 61 | 61 | Remapped | NC_000024.10 |
| GL000208.1 | Chr19|GL000208.1 | 1 | 1 | Remapped | GL000208.1 |
| KI270722.1 | Chr14|KI270722.1 | 1 | 1 | Remapped | KI270722.1 |
| GL000214.1 | Unplaced|GL000214.1 | 3 | 3 | Remapped | GL000214.1 |
| GL000219.1 | Unplaced|GL000219.1 | 8 | 8 | Remapped | GL000219.1 |
| NT_187367.1 | Chr1|NT_187367.1 | 1 | 1 | Remapped | NT_187367.1 |
| NT_187514.1 | Chr1|NT_187514.1 | 1 | 1 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 24 | 24 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 12 | 12 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 3 | 3 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 6 | 6 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 1 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 3 | 3 | Remapped | NT_187646.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 3 | 3 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 4 | 4 | Remapped | NW_009646194.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 5 | 6 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 10 | 10 | Remapped | NW_011332688.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 1 | 1 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 4 | 4 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 1 | Remapped | NW_014040927.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 1 | 1 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 8 | 8 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 1 | 1 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 1 | 1 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 2 | 2 | Remapped | NW_018654708.1 |
| NW_019805487.1 | Chr1|NW_019805487.1 | 1 | 1 | Remapped | NW_019805487.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 3 | 3 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 19 | 19 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 2 | 2 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 9 | 9 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 5 | 5 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 21 | 21 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 5 | 5 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 12 | 12 | Remapped | NT_187529.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 1 | 1 | Remapped | NT_187531.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 18 | 18 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 1 | 1 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 1 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 1 | Remapped | NW_003315909.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 9 | 9 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 6 | 6 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 3 | 3 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 8 | 8 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 30 | 30 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 30 | 30 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 39 | 39 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 32 | 32 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 30 | 30 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 38 | 38 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 3 | 3 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 3 | 3 | Remapped | NT_187534.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 1 | 1 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 3 | 3 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 2 | 2 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 4 | 4 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 31 | 31 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 1 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 4 | 4 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 2 | 2 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 2 | 2 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 2 | 2 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 3 | 3 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 3 | 3 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 3 | 3 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 2 | 2 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 2 | 2 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 1 | Remapped | NW_019805491.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 2 | 2 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 36 | 36 | Remapped | NT_187679.1 |
| NT_187540.1 | Chr4|NT_187540.1 | 3 | 3 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 3 | 3 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 3 | 3 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 18 | 18 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 2 | 2 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 9 | 9 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 19 | 19 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 3 | 3 | Remapped | NW_003315914.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 1 | Remapped | NW_013171799.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 4 | 4 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 3 | 3 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 2 | 2 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 10 | 10 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 13 | 13 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 2 | 2 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 16 | 16 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 2 | 2 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 4 | 4 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 6 | 6 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 6 | 6 | Remapped | NW_003315917.2 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 2 | 2 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 1 | Remapped | NW_003315920.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 3 | 3 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 16 | 16 | Remapped | NW_016107298.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 5 | 5 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 24 | 25 | Remapped | NT_187553.1 |
| NT_187554.1 | Chr6|NT_187554.1 | 2 | 2 | Remapped | NT_187554.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 5 | 5 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 4 | 4 | Remapped | NT_187557.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 20 | 20 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 6 | 6 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 3 | 3 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 1 | 1 | Remapped | NW_013171802.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 1 | 1 | Remapped | NW_013171803.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 1 | 1 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 2 | 2 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 12 | 12 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 2 | 2 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 34 | 35 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 2 | 2 | Remapped | NT_187561.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 9 | 9 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 7 | 7 | Remapped | NT_187564.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 3 | 3 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 4 | 4 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 1 | 1 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 2 | 2 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 2 | 2 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 14 | 14 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 31 | 31 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 1 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 7 | 7 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 25 | 25 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 4 | 4 | Remapped | NT_187569.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 8 | 9 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 10 | 10 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 10 | 10 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 6 | 7 | Remapped | NT_187574.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 3 | 3 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 23 | 23 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 14 | 14 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 1 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 1 | 1 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 10 | 10 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 62 | 64 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 1 | 1 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 2 | 2 | Remapped | NT_187578.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 5 | 6 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 1 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 4 | 5 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 7 | 7 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 6 | 6 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 2 | 2 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 1 | 1 | Remapped | NW_009646202.1 |
| NW_011332692.1 | Chr10|NW_011332692.1 | 1 | 1 | Remapped | NW_011332692.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 1 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 17 | 19 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 9 | 10 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 9 | 9 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 5 | 5 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 3 | 3 | Remapped | NT_187582.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 16 | 16 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 3 | 3 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 21 | 22 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 2 | 3 | Remapped | NW_003315936.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 2 | 2 | Remapped | NW_003871074.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 1 | 1 | Remapped | NW_013171808.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 11 | 13 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 2 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 4 | 5 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 3 | 3 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 9 | 9 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 3 | 3 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 1 | 1 | Remapped | NT_187588.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 2 | 2 | Remapped | NT_187589.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 4 | 4 | Remapped | NT_187591.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 3 | 3 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 5 | 5 | Remapped | NW_003315940.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 2 | 2 | Remapped | NW_003315942.2 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 6 | 6 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 4 | 4 | Remapped | NW_011332696.1 |
| NW_011332697.1 | Chr12|NW_011332697.1 | 1 | 1 | Remapped | NW_011332697.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 7 | 7 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 2 | 2 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 14 | 14 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 5 | 5 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 2 | 2 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 18 | 18 | Remapped | NT_187592.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 4 | 4 | Remapped | NT_187595.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 10 | 10 | Remapped | NT_187596.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 1 | 1 | Remapped | NT_187597.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 1 | 1 | Remapped | NW_009646205.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 3 | 3 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 2 | 2 | Remapped | NW_011332700.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 2 | 2 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 1 | 1 | Remapped | NW_013171811.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 7 | 7 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 2 | 2 | Remapped | NT_187599.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 18 | 18 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 2 | 2 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 11 | 11 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 5 | 5 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 20 | 22 | Remapped | NT_187660.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 1 | 1 | Remapped | NT_187602.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 2 | 2 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 2 | 2 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 3 | 3 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 1 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 5 | 6 | Remapped | NW_003315944.2 |
| NW_012132920.1 | Chr15|NW_012132920.1 | 1 | 1 | Remapped | NW_012132920.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 17 | 18 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 3 | 3 | Remapped | NT_187608.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 11 | 11 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 1 | 1 | Remapped | NW_003315945.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 1 | Remapped | NW_003315946.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 2 | 2 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 2 | 2 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 3 | 3 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 7 | 7 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 1 | 1 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 6 | 6 | Remapped | NW_019805500.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 28 | 28 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 25 | 25 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 15 | 16 | Remapped | NT_187664.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 1 | Remapped | NT_167251.2 |
| NT_187384.1 | Chr17|NT_187384.1 | 1 | 1 | Remapped | NT_187384.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 6 | 6 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 28 | 29 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 28 | 30 | Remapped | NT_187613.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 5 | 5 | Remapped | NT_187615.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 3 | 4 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 48 | 49 | Remapped | NW_003315952.3 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 4 | 4 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 12 | 12 | Remapped | NW_003871091.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 19 | 19 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 2 | 2 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 2 | 2 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 3 | 4 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 21 | 21 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 7 | 7 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 18 | 19 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 1 | 1 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 2 | 2 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 18 | 18 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 1 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 9 | 9 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 4 | 4 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 2 | 3 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 2 | 3 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 3 | 3 | Remapped | NW_019805503.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 18 | 18 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 15 | 15 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 15 | 15 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 15 | 15 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 24 | 24 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 15 | 15 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 19 | 19 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 2 | 2 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 2 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 13 | 14 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 9 | 9 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 3 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 6 | 6 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 3 | 3 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 19 | 19 | Remapped | NW_003571054.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 9 | 9 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 13 | 13 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 16 | 17 | Remapped | NT_187624.1 |
| NT_187625.1 | Chr20|NT_187625.1 | 5 | 5 | Remapped | NT_187625.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 2 | 2 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 10 | 10 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 2 | 2 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 3 | 3 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 3 | 3 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 1 | 1 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 2 | Remapped | NW_003315970.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 7 | 7 | Remapped | NW_015148969.1 |
| NT_187392.1 | Chr22|NT_187392.1 | 1 | 1 | Remapped | NT_187392.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 4 | 5 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 5 | 5 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 6 | 6 | Remapped | NT_187632.1 |
| NT_187667.1 | ChrX|NT_187667.1 | 47 | 49 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 1 | 1 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 47 | 49 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 2 | 2 | Remapped | NT_187635.1 |
| NW_018654726.1 | ChrY|NW_018654726.1 | 1 | 1 | Remapped | NW_018654726.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 2,233 | 2,263 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 2,194 | 2,218 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 1,648 | 1,666 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 1,924 | 1,943 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 1,640 | 1,654 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 1,778 | 1,798 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 1,832 | 1,853 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 1,505 | 1,523 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 1,160 | 1,185 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 1,560 | 1,583 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 1,366 | 1,397 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 1,442 | 1,463 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 1,138 | 1,158 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 858 | 871 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 749 | 762 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 1,037 | 1,047 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 1,083 | 1,101 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 864 | 878 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 980 | 997 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 818 | 836 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 584 | 594 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 629 | 644 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 1,013 | 1,017 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 61 | 61 | Submitted | NC_000024.9 |
| GL000192.1 | Chr1|GL000192.1 | 1 | 1 | Submitted | GL000192.1 |
| GL000193.1 | Chr4|GL000193.1 | 8 | 8 | Submitted | GL000193.1 |
| GL000198.1 | Chr9|GL000198.1 | 1 | 1 | Submitted | GL000198.1 |
| GL000199.1 | Chr9|GL000199.1 | 10 | 10 | Submitted | GL000199.1 |
| GL000202.1 | Chr11|GL000202.1 | 2 | 2 | Submitted | GL000202.1 |
| GL000212.1 | Unplaced|GL000212.1 | 3 | 3 | Submitted | GL000212.1 |
| GL000216.1 | Unplaced|GL000216.1 | 21 | 21 | Submitted | GL000216.1 |
| GL000220.1 | Unplaced|GL000220.1 | 5 | 5 | Submitted | GL000220.1 |
| GL000230.1 | Unplaced|GL000230.1 | 2 | 2 | Submitted | GL000230.1 |
| GL000231.1 | Unplaced|GL000231.1 | 1 | 1 | Submitted | GL000231.1 |
| GL000234.1 | Unplaced|GL000234.1 | 1 | 1 | Submitted | GL000234.1 |
| GL000235.1 | Unplaced|GL000235.1 | 1 | 1 | Submitted | GL000235.1 |
| GL000237.1 | Unplaced|GL000237.1 | 3 | 3 | Submitted | GL000237.1 |
| GL000239.1 | Unplaced|GL000239.1 | 1 | 1 | Submitted | GL000239.1 |
| GL000195.1 | Chr7|GL000195.1 | 6 | 6 | Submitted | GL000195.1 |
| GL000205.1 | Chr17|GL000205.1 | 6 | 6 | Submitted | GL000205.1 |
| GL000206.1 | Chr17|GL000206.1 | 1 | 1 | Submitted | GL000206.1 |
| GL000209.1 | Chr19|GL000209.1 | 1 | 1 | Submitted | GL000209.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| GL000192.1 | Chr1|GL000192.1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
| GL000202.1 | Chr11|GL000202.1 | 2 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 |
| NC_000001.10 | Chr1 | 2,233 | 2,117 | 11 | 8 | 6 | 91 | 2,263 | 2,146 | 11 | 8 | 6 | 92 |
| NC_000002.11 | Chr2 | 2,194 | 2,078 | 3 | 2 | 8 | 103 | 2,218 | 2,102 | 3 | 2 | 8 | 103 |
| NC_000003.11 | Chr3 | 1,648 | 1,562 | 1 | 0 | 2 | 83 | 1,666 | 1,580 | 1 | 0 | 2 | 83 |
| NC_000004.11 | Chr4 | 1,924 | 1,851 | 1 | 1 | 1 | 70 | 1,943 | 1,870 | 1 | 1 | 1 | 70 |
| NC_000005.9 | Chr5 | 1,640 | 1,561 | 0 | 0 | 1 | 78 | 1,654 | 1,575 | 0 | 0 | 1 | 78 |
| NC_000006.11 | Chr6 | 1,778 | 1,701 | 0 | 1 | 1 | 75 | 1,798 | 1,720 | 0 | 1 | 1 | 76 |
| NC_000007.13 | Chr7 | 1,832 | 1,732 | 1 | 1 | 7 | 91 | 1,853 | 1,752 | 1 | 1 | 7 | 92 |
| NC_000008.10 | Chr8 | 1,505 | 1,260 | 1 | 1 | 4 | 239 | 1,523 | 1,274 | 1 | 1 | 4 | 243 |
| NC_000009.11 | Chr9 | 1,160 | 1,147 | 0 | 0 | 1 | 12 | 1,185 | 1,170 | 0 | 0 | 1 | 14 |
| NC_000010.10 | Chr10 | 1,560 | 1,538 | 0 | 1 | 3 | 18 | 1,583 | 1,561 | 0 | 1 | 3 | 18 |
| NC_000011.9 | Chr11 | 1,366 | 1,279 | 0 | 0 | 4 | 83 | 1,397 | 1,305 | 0 | 0 | 4 | 88 |
| NC_000012.11 | Chr12 | 1,442 | 1,359 | 3 | 1 | 3 | 76 | 1,463 | 1,380 | 3 | 1 | 3 | 76 |
| NC_000013.10 | Chr13 | 1,138 | 1,072 | 0 | 0 | 0 | 66 | 1,158 | 1,092 | 0 | 0 | 0 | 66 |
| NC_000014.8 | Chr14 | 858 | 776 | 0 | 2 | 7 | 73 | 871 | 789 | 0 | 2 | 7 | 73 |
| NC_000015.9 | Chr15 | 749 | 710 | 0 | 1 | 0 | 38 | 762 | 720 | 0 | 1 | 0 | 41 |
| NC_000016.9 | Chr16 | 1,037 | 976 | 1 | 1 | 4 | 55 | 1,047 | 985 | 1 | 1 | 4 | 56 |
| NC_000017.10 | Chr17 | 1,083 | 876 | 1 | 4 | 3 | 199 | 1,101 | 887 | 1 | 4 | 3 | 206 |
| NC_000018.9 | Chr18 | 864 | 800 | 0 | 0 | 0 | 64 | 878 | 811 | 0 | 0 | 0 | 67 |
| NC_000019.9 | Chr19 | 980 | 893 | 0 | 4 | 5 | 78 | 997 | 907 | 0 | 4 | 5 | 81 |
| NC_000020.10 | Chr20 | 818 | 780 | 0 | 1 | 1 | 36 | 836 | 797 | 0 | 1 | 1 | 37 |
| NC_000021.8 | Chr21 | 584 | 561 | 0 | 0 | 0 | 23 | 594 | 570 | 0 | 0 | 0 | 24 |
| NC_000022.10 | Chr22 | 629 | 597 | 0 | 2 | 6 | 24 | 644 | 611 | 0 | 2 | 6 | 25 |
| NC_000023.10 | ChrX | 1,013 | 941 | 1 | 4 | 17 | 50 | 1,017 | 943 | 1 | 4 | 17 | 52 |
| NC_000024.9 | ChrY | 61 | 58 | 0 | 0 | 0 | 3 | 61 | 58 | 0 | 0 | 0 | 3 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| GL000208.1 | Chr19|GL000208.1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| GL000214.1 | Unplaced|GL000214.1 | 3 | 3 | 0 | 0 | 0 | 0 | 3 | 3 | 0 | 0 | 0 | 0 |
| GL000219.1 | Unplaced|GL000219.1 | 8 | 8 | 0 | 0 | 0 | 0 | 8 | 8 | 0 | 0 | 0 | 0 |
| GL000230.1 | Unplaced|GL000230.1 | 2 | 1 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Sampleset Type:
- Control
- Size:
- 1
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Subject Phenotype |
|---|---|---|
| SAMN03283347 | HG002 | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | de novo and local sequence assembly | 30,634 |