nstd144 (Gardner et al. 2017)
- Organism:
- Chimpanzee, Human
- Study Type:
- Control Set
- Submitter:
- Scott Devine
- Description:
- Mobile element insertions (MEIs) represent ~25% of all structural variants in human genomes. Moreover, when MEIs disrupt genes, they can influence human traits and diseases. Therefore, MEIs should be fully discovered along with other forms of genetic variation. Here, we describe the Mobile Element Locator Tool (MELT), which was developed as part of the 1000 Genomes Project to perform routine MEI discovery on a population scale. We then used MELT to perform MEI discovery in modern humans, chimpanzees, and ancient (Neanderthal and Denisovan) hominids. Overall, our study provides the most comprehensive map of MEIs to date spanning chimpanzees, ancient hominids, and modern humans. See Variant Summary counts for nstd144 in dbVar Variant Summary.
- Publication(s):
- Gardner et al. 2017
Detailed Information: Download 37798 Variant Regions, Download 38422 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: Pan_troglodytes-2.1.4 (panTro4)
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_006468.3 | Chr1 | 892 | 893 | Submitted | NC_006468.3 |
| NC_006469.3 | Chr2A | 439 | 439 | Submitted | NC_006469.3 |
| NC_006470.3 | Chr2B | 573 | 575 | Submitted | NC_006470.3 |
| NC_006490.3 | Chr3 | 904 | 904 | Submitted | NC_006490.3 |
| NC_006471.3 | Chr4 | 890 | 890 | Submitted | NC_006471.3 |
| NC_006472.3 | Chr5 | 805 | 806 | Submitted | NC_006472.3 |
| NC_006473.3 | Chr6 | 766 | 767 | Submitted | NC_006473.3 |
| NC_006474.3 | Chr7 | 706 | 706 | Submitted | NC_006474.3 |
| NC_006475.3 | Chr8 | 653 | 653 | Submitted | NC_006475.3 |
| NC_006476.3 | Chr9 | 415 | 415 | Submitted | NC_006476.3 |
| NC_006477.3 | Chr10 | 512 | 512 | Submitted | NC_006477.3 |
| NC_006478.3 | Chr11 | 482 | 483 | Submitted | NC_006478.3 |
| NC_006479.3 | Chr12 | 541 | 541 | Submitted | NC_006479.3 |
| NC_006480.3 | Chr13 | 465 | 465 | Submitted | NC_006480.3 |
| NC_006481.3 | Chr14 | 375 | 375 | Submitted | NC_006481.3 |
| NC_006482.3 | Chr15 | 308 | 308 | Submitted | NC_006482.3 |
| NC_006483.3 | Chr16 | 245 | 245 | Submitted | NC_006483.3 |
| NC_006484.3 | Chr17 | 241 | 242 | Submitted | NC_006484.3 |
| NC_006485.3 | Chr18 | 339 | 341 | Submitted | NC_006485.3 |
| NC_006486.3 | Chr19 | 160 | 160 | Submitted | NC_006486.3 |
| NC_006487.3 | Chr20 | 201 | 201 | Submitted | NC_006487.3 |
| NC_006488.3 | Chr21 | 164 | 164 | Submitted | NC_006488.3 |
| NC_006489.3 | Chr22 | 95 | 95 | Submitted | NC_006489.3 |
| NC_006491.3 | ChrX | 348 | 349 | Submitted | NC_006491.3 |
| NC_006492.3 | ChrY | 5 | 5 | Submitted | NC_006492.3 |
| GL393505.1 | Unplaced|GL393505.1 | 7 | 7 | Submitted | GL393505.1 |
| GL390389.1 | Chr6|GL390389.1 | 29 | 29 | Submitted | GL390389.1 |
| GL390916.1 | Chr8|GL390916.1 | 16 | 16 | Submitted | GL390916.1 |
| GL391668.1 | Chr10|GL391668.1 | 14 | 14 | Submitted | GL391668.1 |
| GL391837.1 | Chr11|GL391837.1 | 29 | 29 | Submitted | GL391837.1 |
| GL392075.1 | Chr13|GL392075.1 | 29 | 29 | Submitted | GL392075.1 |
| GL392652.1 | Chr17|GL392652.1 | 1 | 1 | Submitted | GL392652.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 1,965 | 2,010 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 2,254 | 2,305 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 1,859 | 1,910 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 1,985 | 2,031 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 1,780 | 1,807 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 1,696 | 1,740 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 1,567 | 1,605 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 1,368 | 1,400 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 1,130 | 1,148 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 1,204 | 1,227 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 1,240 | 1,280 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 1,259 | 1,292 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 1,024 | 1,067 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 878 | 903 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 756 | 779 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 535 | 539 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 603 | 615 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 729 | 745 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 365 | 373 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 472 | 482 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 355 | 358 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 223 | 227 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 836 | 854 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 39 | 39 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 1 | 1 | Remapped | NT_187513.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 1 | Remapped | NT_187516.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 6 | 6 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 1 | 1 | Remapped | NT_187520.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 5 | 6 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 1 | 1 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 3 | 3 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 2 | 2 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 5 | 5 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 1 | 1 | Remapped | NW_012132914.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 2 | 2 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 1 | 1 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 4 | 4 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 4 | 4 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 2 | 2 | Remapped | NW_018654706.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 2 | 2 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 2 | 2 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 2 | 2 | Remapped | NT_187523.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 3 | 3 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 2 | 2 | Remapped | NT_187647.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 3 | 3 | Remapped | NW_003315908.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 4 | 4 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 2 | 2 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 2 | 2 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 3 | 3 | Remapped | NW_015495299.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 5 | 5 | Remapped | NW_018654709.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 5 | 5 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 3 | 3 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 3 | 3 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 3 | 3 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 3 | 3 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 3 | 3 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 3 | 3 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 1 | 1 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 1 | 1 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 2 | 2 | Remapped | NT_187535.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 4 | 5 | Remapped | NT_187536.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 1 | 1 | Remapped | NT_187538.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 3 | 3 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 2 | 2 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 1 | 1 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 2 | 2 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 3 | 3 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 4 | 4 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 1 | 1 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 1 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 1 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 3 | 3 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 1 | Remapped | NW_019805491.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 3 | 3 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 5 | 5 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 2 | 2 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 5 | 5 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 1 | 1 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 2 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 1 | 1 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 3 | 3 | Remapped | NT_187544.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 1 | 1 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 2 | 2 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 4 | 4 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 1 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 2 | 3 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 3 | 3 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 1 | 1 | Remapped | NW_017363814.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 1 | Remapped | NT_187547.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 2 | 2 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 2 | 2 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 5 | 5 | Remapped | NT_187651.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 6 | 6 | Remapped | NW_003315917.2 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 1 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 2 | 2 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 3 | 3 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 6 | 7 | Remapped | NW_016107298.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 2 | 2 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 3 | 3 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 10 | 10 | Remapped | NT_187556.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 2 | 3 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 1 | 1 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 3 | 4 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 2 | 2 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 2 | 2 | Remapped | NW_013171802.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 2 | 2 | Remapped | NW_018654713.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 1 | 1 | Remapped | NT_187559.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 6 | 6 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 14 | 15 | Remapped | NT_187562.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 3 | 3 | Remapped | NT_187564.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 3 | 3 | Remapped | NW_003315922.2 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 3 | 3 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 1 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 1 | 1 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 3 | 3 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 3 | 3 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 3 | 3 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 2 | 2 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 1 | 1 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 1 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 2 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 2 | 2 | Remapped | NT_187568.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 1 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 3 | 3 | Remapped | NT_187571.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 8 | 8 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 5 | 5 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 1 | Remapped | NT_187654.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 2 | 2 | Remapped | NW_017852931.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 40 | 41 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 2 | 2 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 9 | 9 | Remapped | NT_187578.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 1 | 1 | Remapped | NW_003315929.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 4 | 4 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 2 | 2 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 1 | 1 | Remapped | NW_013171805.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 2 | 2 | Remapped | NW_003315935.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 6 | 6 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 2 | 2 | Remapped | NW_013171807.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 1 | 1 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 2 | 2 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 1 | 1 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 1 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 2 | 2 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 4 | 4 | Remapped | NW_003871074.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 1 | Remapped | NW_011332695.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 1 | 1 | Remapped | NW_013171808.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 1 | 1 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 2 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 2 | 2 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 4 | 4 | Remapped | NW_019805497.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 2 | 2 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 6 | 6 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 4 | 4 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 1 | 1 | Remapped | NT_187588.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 3 | 3 | Remapped | NT_187590.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 3 | 4 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 2 | 2 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 4 | 4 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 4 | 5 | Remapped | NW_003315941.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 1 | 1 | Remapped | NW_003315942.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 2 | 2 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 4 | 4 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 2 | 2 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 8 | 8 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 1 | 1 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 6 | 6 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 7 | 7 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 2 | 2 | Remapped | NW_018654719.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 2 | 2 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 1 | 1 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 3 | 3 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 1 | 1 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 2 | 3 | Remapped | NT_187595.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 1 | 1 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 2 | 2 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 1 | 1 | Remapped | NW_011332700.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 1 | 1 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 2 | 2 | Remapped | NW_013171811.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 3 | 3 | Remapped | NT_187598.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 8 | 9 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 13 | 13 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 1 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 10 | 10 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 6 | 6 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 31 | 33 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 6 | 6 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 2 | 2 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 1 | 1 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 1 | 1 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 2 | 2 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 2 | 2 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 34 | 36 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 15 | 15 | Remapped | NT_187607.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 4 | 4 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 1 | 1 | Remapped | NW_003315945.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 3 | 3 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 2 | 2 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 6 | 7 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 1 | 1 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 7 | 7 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 2 | 2 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 1 | 1 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 7 | 7 | Remapped | NT_187663.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 2 | 2 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 33 | 34 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 5 | 5 | Remapped | NT_187615.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 1 | 1 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 3 | 3 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 1 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 7 | 7 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 1 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 1 | 1 | Remapped | NW_003871091.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 4 | 4 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 6 | 6 | Remapped | NW_017363818.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 1 | 1 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 1 | 1 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 2 | 2 | Remapped | NT_187666.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 5 | 5 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 1 | 1 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 3 | 3 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 2 | 2 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 2 | 2 | Remapped | NW_003315961.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 3 | 3 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 5 | 5 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 11 | 11 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 7 | 7 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 4 | 4 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 4 | 4 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 4 | 4 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 8 | 8 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 4 | 4 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 5 | 5 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 1 | 1 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 1 | Remapped | NT_187621.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 2 | 2 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 5 | 5 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 8 | 8 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 3 | 3 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 4 | 4 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 1 | 1 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 1 | 1 | Remapped | NT_187624.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 1 | Remapped | NW_003315966.2 |
| NT_187627.1 | Chr21|NT_187627.1 | 1 | 1 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 2 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 2 | 2 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 1 | Remapped | NT_187682.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 1 | 1 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 1 | 1 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 2 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 2 | 2 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 3 | 3 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 2 | 2 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 1 | 1 | Remapped | NT_187635.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 6 | 6 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 1,970 | 2,015 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 2,256 | 2,307 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 1,859 | 1,910 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 1,985 | 2,031 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 1,780 | 1,807 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 1,696 | 1,740 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 1,569 | 1,607 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 1,370 | 1,402 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 1,131 | 1,149 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 1,205 | 1,228 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 1,241 | 1,281 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 1,259 | 1,292 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 1,024 | 1,067 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 878 | 903 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 756 | 779 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 535 | 539 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 609 | 621 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 729 | 745 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 368 | 376 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 472 | 482 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 355 | 358 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 225 | 229 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 838 | 856 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 39 | 39 | Submitted | NC_000024.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 1,970 | 1,917 | 8 | 1 | 2 | 42 | 2,015 | 1,961 | 8 | 1 | 2 | 43 |
| NC_000002.11 | Chr2 | 2,256 | 2,220 | 2 | 1 | 2 | 31 | 2,307 | 2,271 | 2 | 1 | 2 | 31 |
| NC_000003.11 | Chr3 | 1,859 | 1,823 | 1 | 0 | 0 | 35 | 1,910 | 1,873 | 1 | 0 | 0 | 36 |
| NC_000004.11 | Chr4 | 1,985 | 1,955 | 0 | 0 | 0 | 30 | 2,031 | 2,000 | 0 | 0 | 0 | 31 |
| NC_000005.9 | Chr5 | 1,780 | 1,754 | 0 | 0 | 0 | 26 | 1,807 | 1,780 | 0 | 0 | 0 | 27 |
| NC_000006.11 | Chr6 | 1,696 | 1,669 | 0 | 0 | 0 | 27 | 1,740 | 1,711 | 0 | 0 | 0 | 29 |
| NC_000007.13 | Chr7 | 1,569 | 1,528 | 1 | 0 | 1 | 39 | 1,607 | 1,565 | 1 | 0 | 1 | 40 |
| NC_000008.10 | Chr8 | 1,370 | 1,303 | 0 | 0 | 0 | 67 | 1,402 | 1,334 | 0 | 0 | 0 | 68 |
| NC_000009.11 | Chr9 | 1,131 | 1,106 | 5 | 1 | 1 | 18 | 1,149 | 1,124 | 5 | 1 | 1 | 18 |
| NC_000010.10 | Chr10 | 1,205 | 1,191 | 3 | 0 | 1 | 10 | 1,228 | 1,214 | 3 | 0 | 1 | 10 |
| NC_000011.9 | Chr11 | 1,241 | 1,216 | 0 | 0 | 1 | 24 | 1,281 | 1,256 | 0 | 0 | 1 | 24 |
| NC_000012.11 | Chr12 | 1,259 | 1,200 | 0 | 0 | 0 | 59 | 1,292 | 1,231 | 0 | 0 | 0 | 61 |
| NC_000013.10 | Chr13 | 1,024 | 1,012 | 0 | 0 | 0 | 12 | 1,067 | 1,054 | 0 | 0 | 0 | 13 |
| NC_000014.8 | Chr14 | 878 | 842 | 1 | 0 | 0 | 35 | 903 | 866 | 1 | 0 | 0 | 36 |
| NC_000015.9 | Chr15 | 756 | 709 | 0 | 0 | 0 | 47 | 779 | 730 | 0 | 0 | 0 | 49 |
| NC_000016.9 | Chr16 | 535 | 495 | 0 | 0 | 0 | 40 | 539 | 498 | 0 | 0 | 0 | 41 |
| NC_000017.10 | Chr17 | 609 | 541 | 0 | 0 | 1 | 67 | 621 | 552 | 0 | 0 | 1 | 68 |
| NC_000018.9 | Chr18 | 729 | 706 | 0 | 0 | 0 | 23 | 745 | 722 | 0 | 0 | 0 | 23 |
| NC_000019.9 | Chr19 | 368 | 341 | 1 | 0 | 0 | 26 | 376 | 349 | 1 | 0 | 0 | 26 |
| NC_000020.10 | Chr20 | 472 | 469 | 0 | 0 | 0 | 3 | 482 | 479 | 0 | 0 | 0 | 3 |
| NC_000021.8 | Chr21 | 355 | 347 | 0 | 0 | 0 | 8 | 358 | 350 | 0 | 0 | 0 | 8 |
| NC_000022.10 | Chr22 | 225 | 216 | 2 | 0 | 1 | 6 | 229 | 220 | 2 | 0 | 1 | 6 |
| NC_000023.10 | ChrX | 838 | 827 | 3 | 0 | 2 | 6 | 856 | 845 | 3 | 0 | 2 | 6 |
| NC_000024.9 | ChrY | 39 | 33 | 0 | 0 | 0 | 6 | 39 | 33 | 0 | 0 | 0 | 6 |
Samplesets
Number of Samplesets: 3
- Sampleset ID:
- 1
- Name:
- 1000 Genomes Low Coverage Samples
- Size:
- 2,453
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| HG00126 | HG00126 | Male | GBR | Not reported |
| HG00100 | HG00100 | Female | GBR | Not reported |
| HG00244 | HG00244 | Male | GBR | Not reported |
| HG00114 | HG00114 | Male | GBR | Not reported |
| HG00265 | HG00265 | Male | GBR | Not reported |
| HG00173 | HG00173 | Female | FIN | Not reported |
| HG00234 | HG00234 | Male | GBR | Not reported |
| HG00150 | HG00150 | Female | GBR | Not reported |
| HG00256 | HG00256 | Male | GBR | Not reported |
| HG00179 | HG00179 | Female | FIN | Not reported |
| HG00255 | HG00255 | Female | GBR | Not reported |
| HG00115 | HG00115 | Male | GBR | Not reported |
| HG00096 | HG00096 | Male | GBR | Not reported |
| HG00148 | HG00148 | Male | GBR | Not reported |
| HG00235 | HG00235 | Female | GBR | Not reported |
| HG00257 | HG00257 | Female | GBR | Not reported |
| HG00113 | HG00113 | Male | GBR | Not reported |
| HG00188 | HG00188 | Male | FIN | Not reported |
| HG00185 | HG00185 | Male | FIN | Not reported |
| HG00262 | HG00262 | Female | GBR | Not reported |
| HG00157 | HG00157 | Male | GBR | Not reported |
| HG00133 | HG00133 | Female | GBR | Not reported |
| HG00099 | HG00099 | Female | GBR | Not reported |
| HG00259 | HG00259 | Female | GBR | Not reported |
| HG00177 | HG00177 | Female | FIN | Not reported |
| HG00231 | HG00231 | Female | GBR | Not reported |
| HG00158 | HG00158 | Female | GBR | Not reported |
| HG00130 | HG00130 | Female | GBR | Not reported |
| HG00127 | HG00127 | Female | GBR | Not reported |
| HG00101 | HG00101 | Male | GBR | Not reported |
| HG00176 | HG00176 | Female | FIN | Not reported |
| HG00112 | HG00112 | Male | GBR | Not reported |
| HG00258 | HG00258 | Female | GBR | Not reported |
| HG00186 | HG00186 | Male | FIN | Not reported |
| HG00097 | HG00097 | Female | GBR | Not reported |
| HG00181 | HG00181 | Male | FIN | Not reported |
| HG00121 | HG00121 | Female | GBR | Not reported |
| HG00124 | HG00124 | Female | GBR | Not reported |
| HG00253 | HG00253 | Female | GBR | Not reported |
| HG00142 | HG00142 | Male | GBR | Not reported |
| HG00254 | HG00254 | Female | GBR | Not reported |
| HG00105 | HG00105 | Male | GBR | Not reported |
| HG00250 | HG00250 | Female | GBR | Not reported |
| HG00120 | HG00120 | Female | GBR | Not reported |
| HG00138 | HG00138 | Male | GBR | Not reported |
| HG00103 | HG00103 | Male | GBR | Not reported |
| HG00141 | HG00141 | Male | GBR | Not reported |
| HG00240 | HG00240 | Female | GBR | Not reported |
| HG00143 | HG00143 | Male | GBR | Not reported |
| HG00187 | HG00187 | Male | FIN | Not reported |
| HG00145 | HG00145 | Male | GBR | Not reported |
| HG00132 | HG00132 | Female | GBR | Not reported |
| HG00137 | HG00137 | Female | GBR | Not reported |
| HG00118 | HG00118 | Female | GBR | Not reported |
| HG00178 | HG00178 | Female | FIN | Not reported |
| HG00260 | HG00260 | Male | GBR | Not reported |
| HG00116 | HG00116 | Male | GBR | Not reported |
| HG00243 | HG00243 | Male | GBR | Not reported |
| HG00261 | HG00261 | Female | GBR | Not reported |
| HG00102 | HG00102 | Female | GBR | Not reported |
| HG00245 | HG00245 | Female | GBR | Not reported |
| HG00107 | HG00107 | Male | GBR | Not reported |
| HG00264 | HG00264 | Male | GBR | Not reported |
| HG00242 | HG00242 | Male | GBR | Not reported |
| HG00190 | HG00190 | Male | FIN | Not reported |
| HG00117 | HG00117 | Male | GBR | Not reported |
| HG00128 | HG00128 | Female | GBR | Not reported |
| HG00266 | HG00266 | Female | FIN | Not reported |
| HG00263 | HG00263 | Female | GBR | Not reported |
| HG00180 | HG00180 | Female | FIN | Not reported |
| HG00237 | HG00237 | Female | GBR | Not reported |
| HG00129 | HG00129 | Male | GBR | Not reported |
| HG00246 | HG00246 | Male | GBR | Not reported |
| HG00139 | HG00139 | Male | GBR | Not reported |
| HG00160 | HG00160 | Male | GBR | Not reported |
| HG00183 | HG00183 | Male | FIN | Not reported |
| HG00109 | HG00109 | Male | GBR | Not reported |
| HG00159 | HG00159 | Male | GBR | Not reported |
| HG00149 | HG00149 | Male | GBR | Not reported |
| HG00125 | HG00125 | Female | GBR | Not reported |
| HG00171 | HG00171 | Female | FIN | Not reported |
| HG00232 | HG00232 | Female | GBR | Not reported |
| HG00174 | HG00174 | Female | FIN | Not reported |
| HG00122 | HG00122 | Female | GBR | Not reported |
| HG00182 | HG00182 | Male | FIN | Not reported |
| HG00151 | HG00151 | Male | GBR | Not reported |
| HG00154 | HG00154 | Female | GBR | Not reported |
| HG00136 | HG00136 | Male | GBR | Not reported |
| HG00251 | HG00251 | Male | GBR | Not reported |
| HG00155 | HG00155 | Male | GBR | Not reported |
| HG00111 | HG00111 | Female | GBR | Not reported |
| HG00233 | HG00233 | Female | GBR | Not reported |
| HG00189 | HG00189 | Male | FIN | Not reported |
| HG00106 | HG00106 | Female | GBR | Not reported |
| HG00252 | HG00252 | Male | GBR | Not reported |
| HG00131 | HG00131 | Male | GBR | Not reported |
| HG00108 | HG00108 | Male | GBR | Not reported |
| HG00119 | HG00119 | Male | GBR | Not reported |
| HG00146 | HG00146 | Female | GBR | Not reported |
| HG00239 | HG00239 | Female | GBR | Not reported |
- Sampleset ID:
- 2
- Name:
- Ancient genomes
- Size:
- 2
- Organisms:
- Homo sapiens neanderthalensis, Homo sapiens subsp. 'Denisova'
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Subject Phenotype |
|---|---|---|
| Denisovan | Denisovan-Ancient | Not reported |
| Neanderthal | Neanderthal-Ancient | Not reported |
- Sampleset ID:
- 3
- Name:
- Chimpanzee samples
- Size:
- 24
- Organisms:
- Pan troglodytes
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Subject Phenotype |
|---|---|---|
| Andromeda | Andromeda | Not reported |
| Vincent | Vincent | Not reported |
| Koby | Koby | Not reported |
| Paquita | Paquita | Not reported |
| Vaillant | Vaillant | Not reported |
| Koto | Koto | Not reported |
| Banyo | Banyo | Not reported |
| Bosco | Bosco | Not reported |
| Nakuu | Nakuu | Not reported |
| Julie_LWC21 | Julie_LWC21 | Not reported |
| Kidongo | Kidongo | Not reported |
| Donald | Donald | Not reported |
| Basho | Basho | Not reported |
| Damian | Damian | Not reported |
| Doris | Doris | Not reported |
| Jimmie | Jimmie | Not reported |
| Julie_A959 | Julie_A959 | Not reported |
| Bwambale | Bwambale | Not reported |
| Kopongo | Kopongo | Not reported |
| Tobi | Tobi | Not reported |
| Clara | Clara | Not reported |
| Harriet | Harriet | Not reported |
| Clint | Clint | Not reported |
| Taweh | Taweh | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Split read and paired-end mapping | HiSeq 2000 | http://melt.igs.umaryland.edu | 22,723 |
| 2 | Discovery | Sequencing | Split read and paired-end mapping | HiSeq 2000 | http://melt.igs.umaryland.edu | 3,142 |
| 3 | Discovery | Sequencing | Split read and paired-end mapping | HiSeq 2000 | http://melt.igs.umaryland.edu | 898 |
| 4 | Discovery | Sequencing | Split read and paired-end mapping | HiSeq 2000 | http://melt.igs.umaryland.edu | 11,659 |