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nstd139 (Luo et al. 2019)

Organism:
Human
Study Type:
Case-Set
Submitter:
Tao Luo
Description:
Gene deletion studies in mice have showed that CatSper is crucial for mammalian male fertility. However, the significance of CatSper for human fertilization remains largely unclear. Therefore, a case only containing CatSper deficiency should help reveal the significance of CatSper on human sperm functions. In this study, we identified a CatSper current-deficient man who is an idiopathic infertile patient with normal sperm morphology, count and initial motility. This patient is an ideal case to study the functional significance of CatSper for fertilization success. Thus human whole-genome resequencing was used to identify novel genetic variations responsible for infertility in the patient. See Variant Summary counts for nstd139 in dbVar Variant Summary.
Project:
PRJNA360356
Publication(s):
Luo et al. 2019

Detailed Information: Download 1 Variant Region, Download 1 Variant Call, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000015.10Chr1511RemappedNC_000015.10
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000015.9Chr1511SubmittedNC_000015.9

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000015.9Chr15110000110000

Samplesets

Number of Samplesets: 1

Name:
LYX-IMI-B
Size:
1
Organisms:
Homo sapiens
Sampleset Phenotype(s):
Male infertility
Sex:
Male
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDCell TypeSubject ID SexEthnicitySubject AgeSubject Phenotype
    SAMN06209342whole blood6209342MaleAsian24 yearsNot reported

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsNumber of Variant Calls
    1DiscoverySequencingPaired-end mappingIllumina HiSeq X Ten1

    Validations

    No validation data were submitted for this study.

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