accession
Print a data report containing genome metadata by Assembly or BioProject accession
accession
Name
datasets summary genome accession - Print a data report containing genome metadata by Assembly or BioProject accession
Synopsis
datasets summary genome accession <accession ...> [flags]
Description
Print a data report containing genome metadata by Assembly or BioProject accession. The data report is returned in JSON format.
Examples
datasets summary genome accession GCF_000001405.40
datasets summary genome accession GCA_003774525.2 GCA_000001635
datasets summary genome accession GCF_000001405.40 --report sequence --as-json-lines
datasets summary genome accession PRJNA31257
Options
--annotated Limit to annotated genomes
--api-key string Specify an NCBI API key
--as-json-lines Output results in JSON Lines format
--assembly-level string Limit to genomes at one or more assembly levels (comma-separated):
* chromosome
* complete
* contig
* scaffold
(default "[]")
--assembly-source string Limit to 'RefSeq' (GCF_) or 'GenBank' (GCA_) genomes (default "all")
--assembly-version string Limit to 'latest' assembly accession version or include 'all' (latest + previous versions)
--debug Emit debugging info
--exclude-atypical Exclude atypical assemblies
--exclude-multi-isolate Exclude assemblies from multi-isolate projects
--from-type Only return records with type material
--help Print detailed help about a datasets command
--inputfile string Read a list of NCBI Assembly or BioProject accessions from a file to use as input
--limit string Limit the number of genome summaries returned
* all: returns all matching genome summaries
* a number: returns the specified number of matching genome summaries
(default "all")
--mag string Limit to metagenome assembled genomes (only) or remove them from the results (exclude) (default "all")
--reference Limit to reference genomes
--released-after string Limit to genomes released on or after a specified date (MM/DD/YYYY)
--released-before string Limit to genomes released on or before a specified date (MM/DD/YYYY)
--report string Choose the output type:
* genome: Retrieve the primary genome report
* sequence: Retrieve the sequence report
* ids_only: Retrieve only the genome identifiers
(default "genome")
--search strings Limit results to genomes with specified text in the searchable fields:
species and infraspecies, assembly name and submitter.
To search multiple strings, use the flag multiple times.
--version Print version of datasets
Generated May 16, 2024