microbigge

Name

dataformat excel microbigge - Convert MicroBIGG-E Data Report into an Excel workbook

Synopsis

dataformat excel microbigge [flags]

Description

Convert MicroBIGG-E Data Report into an Excel workbook.

Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.

Examples

  dataformat excel microbigge --inputfile pathogen_package/ncbi_dataset/data/data_report.jsonl --outputfile pathogen.xlsx
  dataformat excel microbigge --package van.zip --outputfile van.xlsx

Options

      --fields strings      Comma-separated list of fields
      --force               Force dataformat to run without type check prompt
  -h, --help                help for microbigge
      --inputfile string    Input file (default "/dev/stdin")
      --outputfile string   Excel workbook file
      --package string      Data package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields