4OU9,5J55


Conserved Protein Domain Family
RPE65

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pfam03055: RPE65 (this model, PSSM-Id:397263 is obsolete and has been replaced by 460788)
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Retinal pigment epithelial membrane protein
This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria.
Statistics
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PSSM-Id: 397263
Aligned: 521 rows
Threshold Bit Score: 260.997
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4OU9_A        28 PQEW-DYwvE--Dv--eGSIPPDLQGTLYRNGPG-LLEIgDRPLKHPFDGDGMVTAFKFPg----DgrvHFQSKFvRTQG 97  Synechocystis s...
EDP06595      79 VTEAaAQvv-------sGRLPSWLRGSLLLNGCGdFR-----GMQHLFDGYACLSRVRLDgq-dnRa--WASQRFlDTDA 143 Chlamydomonas r...
XP_002972693  92 WNSIrREswEgeLpviqGQIPLWLKGTYLRNGPGrFEMG-EHRFGHLFDGYSCLLRLYFEn---gKl--HVKHAQlQSDA 165 Selaginella moe...
Q93VD5        69 sTSVrQErwEgdLpi-eGCLPPWLNGTYIRNGPGmWDVG-EHAFHHLFDGYATLVRVSFRggggaRa--TGAHRQiESEA 144 Japanese rice
XP_004969931  66 WTSVrQErwEgeLav-eGRLPDWLNGTYLRNGPGlWDVG-GGDFHHLFDGYATLVRISFRq---gRa--TGAHRQiESDA 138 foxtail millet
XP_009389368  86 WTSIrQErwEgkLvv-eGDVPRWLNGTYLRNGPGlWHID-EYNFRHLFDGYATLVRVYFEq---gRv--MASHRQvESEA 158 wild Malaysian ...
EES03597      95 WKSVrQErwEgaLel-eGELPLWLDGTYLRNGPGlWNLG-DYGFRHLFDGYATLVRVSFRn---gHa--VGAHRQiESEA 167 sorghum
KRH52748      83 WTSIpQErwEgeLqv-qGQIPLWLEGTYLRNGPGmWHIG-DYNFRHLFDGYATLVRLGFRn---gRl--VAGHRQiESEA 155 soybean
ERN12955      72 WQSVpKEhwTgeLav-eGEIPTWLNGTYLRNGPGlFHIG-KYTCQHLFDGYATVIRLHFDn---gRl--IASHRQvESNA 144 Amborella trich...
Q8VY26        83 WTSVqQEnwEgeLtv-qGKIPTWLNGTYLRNGPGlWNIG-DHDFRHLFDGYSTLVKLQFDg---gRi--FAAHRLlESDA 155 thale cress
4OU9_A        98 YVEEQKAGKmiyrgvfgsqpag-------------gwlktifdlrlknIANTNIT-YwGDRLLALWEGGQPH-RL-EPSN 161 Synechocystis s...
EDP06595     144 YSAFRS-TGrmkyrefqtpvpaegplgraaavldntmalmskgraftdNASVSITsLpGGKLLALSETRSAA-YLvDPDT 221 Chlamydomonas r...
XP_002972693 166 YK-SARKNQqacfrefsvvpkhenvw-----slledvvgmamgttltdNANTGVIcLgDGRVVCITETVKSStQI-DPWT 238 Selaginella moe...
Q93VD5       145 YR-AAVARGrpvlrefshcpapaksll----hrfgdlvglvtgaaltdNPNSAVLpLgDGRVMCLTETTKSSvLI-DPDT 218 Japanese rice
XP_004969931 139 YK-AAVASGrpvlrefsqcpkprnll-----drvtnavgiasgavltdNPNSAVLpLgDGRVLCVTETTKSSiLI-DPDT 211 foxtail millet
XP_009389368 159 YK-AAMKNRrlcyrefseapkpanfl-----ayvgevaslfsgasltdNSNTGVVrLgDGRVLCLTETIKGSiQI-DPDT 231 wild Malaysian ...
EES03597     168 YK-AARANGkvcyrefsevpkadsfl-----shvgqlatlfsgssltdNSNTGVVrLgDGRVLCLTETIKGSiVV-DPDT 240 sorghum
KRH52748     156 YR-AAKKNKkicyrefsevpkaanfl-----ayvgelaslfsgasltdNANTGVVkLgDGRVVCLTETQKGSiVI-DPET 228 soybean
ERN12955     145 YK-AAKEKGrpyyrefsevlsdsnfls---qigelaglltgtsltltdNSNAGVFrLnDGRVLCITETVAGVvEI-DPDT 219 Amborella trich...
Q8VY26       156 YK-AAKKHNrlcyrefsetpksviinkn-pfsgigeivrlfsgesltdNANTGVIkLgDGRVMCLTETQKGSiLV-DHET 232 thale cress
4OU9_A       162 LATIGLDDLggilaegQPL------SAHPRIDpastfdGGQPCYVTFSIkSslsSTlTLLELD-Pqgkllrq------kt 228 Synechocystis s...
EDP06595     222 LATLQQVEPa------DGLpgd-ltTAHPKRT------P-DGRLVNFSRsL---PFgGYHVYVqDpaslkrtqia-fird 283 Chlamydomonas r...
XP_002972693 239 LDTIGRFTYd------DNHkgl-lhSGHPYVT------DK--EFITALPdL---IKpGYDIVRmEpgtntrkhl--grvn 298 Selaginella moe...
Q93VD5       219 LETVGRFRYt------DRLggm-vqSAHPIVT------DT--EFLTLLPdL---VRpGHLVVRmEagsnerkvig-rmdc 279 Japanese rice
XP_004969931 212 LATVGKFEYa------DGLggmmiqSAHPIVT------ES--ELLTVLPdL---ARpGHLVVRmAvgsderkvvg-rvgc 273 foxtail millet
XP_009389368 232 LETIGKFVYe------DNLggl-ihSAHPIVT------ES--EFLTLLPdL---VRpGYLVVTmKpgsnerrvmg-rvnc 292 wild Malaysian ...
EES03597     241 LDTLGKFEYt------DKLggl-ihSAHPIVT------DT--EFWTLIPdL---IRpGYSVVRmDagtnerrfvg-rvdc 301 sorghum
KRH52748     229 LETVGKFEYs------DSLggl-ihSAHPIVT------DE--EFLTLLPdL---VRaGYLVVRmEpgtnerrvig-rvnc 289 soybean
ERN12955     220 LETIGKFEFs------DGLggl-vhAAHPIVT------DN--EMITLMPdL---FKpGYRVLKmApgsnkrdvig-rvdc 280 Amborella trich...
Q8VY26       233 LETIGKFEYd------DVLsdhmiqSAHPIVT------ET--EMWTLIPdL---VKpGYRVVRmEagsnkrevvgrvrcr 295 thale cress
4OU9_A       229 etfpgFAFIHDFAITPHYAIFLQNNVTlnglpYLf---------GlrGAGEcvQFHPDKPAQIILVP-RD-Gge--ikRI 295 Synechocystis s...
EDP06595     284 rdplaPCWVHDMAVTRTHLVVVEAPVF-----INmqslv-lgepRpyVFMD---WRPEDGTRVHVIAlDGsGvv--thTA 352 Chlamydomonas r...
XP_002972693 299 ckgpaPGWIHSFALTENYIVIPEMALR-----YStknllkaepcPyyKF----EYMPEHGSYLHVMD-RKsGkvvnvvEV 368 Selaginella moe...
Q93VD5       280 rggpsPGWLHSFAVTEKYAVVPEMPLR-----YSsasllaselaPfyAF----DWVPASGSYMHVMC-KStGktvasvEV 349 Japanese rice
XP_004969931 274 rggptPGWMHSFAVTENYVVVPEMPLR-----YSasslvkselaPyyAF----EWLPASGSYMHVMC-RStGktvasvEV 343 foxtail millet
XP_009389368 293 rggaaPGWVHSFAVTDRYVVVPEMPLR-----YCvhnllraeptPlyKF----EWHPESGSYMHVMS-RAtGkivasvEV 362 wild Malaysian ...
EES03597     302 rggpaPGWVHSFPITDHYVVVPEMPLR-----YCarnllraeptPlyKF----EWHLESGSYMHVMC-KAsGrvvasvEV 371 sorghum
KRH52748     290 rggpaPGWVHSFPVTQHYVVVPEMPLR-----YCaqnllkaeptPlyKF----EWHPESRAFMHVMC-KTsGkivasvEV 359 soybean
ERN12955     281 kggpaPGWVHSFPVTDNYVVVPEMPLR-----YCtsnllkaeftQhyKF----EWLPESKGYMHIMC-KRsGkvvasvEV 350 Amborella trich...
Q8VY26       296 sgswgPGWVHSFAVTENYVVIPEMPLR-----YSvknllraeptPlyKF----EWCPQDGAFIHVMS-KLtGevvasvEV 365 thale cress
4OU9_A       296 PvqAGFVFHHANAFEEN------GK--IiLDSICY--NslPqVDTDG-DFrstnfdnL----DPgQLWRFTIDP-AAATV 359 Synechocystis s...
EDP06595     353 P--ALFTFHFSNAFERPsasspgATelC-VDFSVYddP--A-ILNDLsLKemm--dmPgkdiSPsRLRRLTMPLrDAAGK 424 Chlamydomonas r...
XP_002972693 369 P--NFLMFHFINAYEETged-gkPRi-V-ADCCEHlsN--PiILRRMeLAelrskg---kempyaRLGRFKIPIsGGGKG 438 Selaginella moe...
Q93VD5       350 P--PFMAIHFINAYEEEg----dEAavV-VDCCEHygD--PaIIETLvLSrlrllrg-kdvlpnaRVGRFRIPLdGSPFG 419 Japanese rice
XP_004969931 344 P--PFMAIHYINAYEEKded-grAAavI-VDCCEHygD--PaIIETLvLHrlrslrd-edvlpnaRVGRFTIPLdGSPYG 416 foxtail millet
XP_009389368 363 P--PFVTFHFINAYEEVded-grITgiV-ADCCEHnaD--TsILDLLrLQnlrsftg-ldalpdaRVGRFRIPMdGRPRG 435 wild Malaysian ...
EES03597     372 P--PFVTFHFINAYEEKdee-grVTaiV-ADCCEHnaN--TtILDKLrLQnlrsstg-qdvlpdaRVGRFRIPLdGSPFG 444 sorghum
KRH52748     360 P--LFVTFHFINAYEEQded-grVTaiI-ADCCEHnsD--TtILDRLrLQnlrsfng-edvlpdaRVGRFRIPLdGSPYG 432 soybean
ERN12955     351 P--LYITFHYINAYEDRded-grLSv-V-VDCCEHnaD--TtILHILeLQslrkyig-qdvlpnaRVGRFRVPLdGSPKG 422 Amborella trich...
Q8VY26       366 P--AYVTFHFINAYEEDkngdgkATviI-ADCCEHnaD--TrILDMLrLDtlrsshg-hdvlpdaRIGRFRIPLdGSKYG 439 thale cress
4OU9_A       360 EK--------------QLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHStgnaPL-QAILKVDLESGTetlrsfAPHG-- 422 Synechocystis s...
EDP06595     425 PAgparldapapllrdESAYGNFVEFPAFNTKFAGLPYRYCYSTAAVRPt---NMgNALAVHDLQEGT------SRLWhs 495 Chlamydomonas r...
XP_002972693 439 TLena---------vpPQVHGHGLDMNTMNPHYYSRDYRYVYANGAHRPc---HFpNSLVKIDIKGQS------AKEWye 500 Selaginella moe...
Q93VD5       420 ELeta---------ldPEEHGRGMDMCSINPARLGRKYQYAYACGARRPc---NFpNTLTKIDLVEKK------AKSWhe 481 Japanese rice
XP_004969931 417 ELeta---------lgPEEHGRGMDMCSINPAYLGKRYRYAYACGARRPc---NFpNTVTKIDLVEKT------AKNWhd 478 foxtail millet
XP_009389368 436 ELhaa---------ldPEEHGRGMDMCSINPANLGKKYRYAYACGAKRPc---NFpNTLTKIDLVEKK------AKNWhe 497 wild Malaysian ...
EES03597     445 ELesa---------ldPDQHGRGMDMCSINPAHVGKKYRYAYACGAQRPc---NFpNTLTKIDLVEKT------AKNWye 506 sorghum
KRH52748     433 TLdaa---------lePNEHGRGMDMCSINPNYLGKKYRYAYACGAQRPc---NFpNTLTKLDFELKK------AKNWhe 494 soybean
ERN12955     423 TLesa---------vdPDEHGRGMDMCSINPAYRGKKYRYLYSCGAQRPc---NFpNTLTKIDLEKKT------ATNWhd 484 Amborella trich...
Q8VY26       440 KLeta---------veAEKHGRAMDMCSINPLYLGQKYRYVYACGAQRPc---NFpNALSKVDIVEKK------VKNWhe 501 thale cress
4OU9_A       423 ---FAGEPIFV--PRPggVAEDDGWLLCLIYkaDLHRSELVILDAQDItapaIATLKLKhHIPYPLHGSWAQ 489 Synechocystis sp. PCC 6...
EDP06595     496 pggMPAEPCFVprPGS--SDEADGVVLAAVVg-ADGGSSVVVLEGGSLq--eLARVKLPvTVPYRFHGTFVQ 562 Chlamydomonas reinhardtii
XP_002972693 501 hgsIPTEPMFVprPGA--TEEDDGVAISIVn-dDKGDGYVLLLDGKSFe--eVARAPLPyGLPYGIHGAWLD 567 Selaginella moellendorffii
Q93VD5       482 egsVPSEPFFVarPGA--TDEDDGVVISIVs-sDDGEGYALVLDATTFe--eIARVRFPyGLPYGFHGCWIP 548 Japanese rice
XP_004969931 479 egaVPSEPFFVarPGA--TDEDDGVVISIVs-aVGGDGYALVLDATTFq--eIARVRFPyGLPYGFHGCWIH 545 foxtail millet
XP_009389368 498 ngaVPSEPFFVarPGA--TEEDDGVVISVVs-dKNGEGYALVLDGVKFe--eIARAKFPyGLPYGLHGCWVP 564 wild Malaysian banana
EES03597     507 egaVPSEPFFVprPGA--VEEDDGVAISMVs-aKDGSAYALVLDAKTFq--eIARAKFPyAMPYGLHCCWVP 573 sorghum
KRH52748     495 egaVPSEPFFVarPGA--TEEDDGVVISIVs-eKNGEGFALVLDGSTFe--eIARAKFPyGLPYGLHGCWVP 561 soybean
ERN12955     485 dgaVPSEPFFVqrPGA--IAEDDGVLISLIs-eKDGGGYALVLDATTFs--eVARTRLPyGLPYGLHGCWIP 551 Amborella trichopoda
Q8VY26       502 hgmIPSEPFFVprPGA--THEDDGVVISIVs-eENGGSFAILLDGSSFe--eIARAKFPyGLPYGLHGCWIP 568 thale cress
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