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Accession: PRJNA308180 ID: 308180

GenomeTrakr Project: Environmental Salmonella isolates, Emory University - FDA-CFSAN

See Genome Information for Salmonella enterica
Whole genome sequencing of environmental Salmonella isolates - Emory University - FDA-CFSAN
AccessionPRJNA308180
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 7-Jan-2016
FDA
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8113
WGS master161
Genomic DNA21
SRA Experiments177
Protein Sequences662296
Other datasets
BioSample174
Assembly170
Assembly details:
Assembly levelNumber of Assemblies
9
161
170
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_026579285.1ContigABJPYV000000000
SAMN31972477
CFSAN058516
GCA_026574295.1ContigABJPPI000000000
SAMN31972474
CFSAN058517
GCA_026576565.1ContigABJPTS000000000
SAMN31972822
CFSAN058522
GCA_026576185.1ContigABJPSX000000000
SAMN31972802
CFSAN058564
GCA_026576685.1ContigABJPTX000000000
SAMN31972750
CFSAN058500
GCA_026576745.1ContigABJPTZ000000000
SAMN31972748
CFSAN058501
GCA_026577115.1ContigABJPUU000000000
SAMN31972590
CFSAN058509
GCA_026577225.1ContigABJPVA000000000
SAMN31972584
CFSAN058512
GCA_026576775.1ContigABJPUC000000000
SAMN31972746
CFSAN058513
GCA_026577385.1ContigABJPVJ000000000
SAMN31972479
CFSAN058515
GCA_026577445.1ContigABJPVL000000000
SAMN31972481
CFSAN058514
GCA_003067765.2Complete genomeSAMN08823296
CFSAN058598
GCA_003064405.2Complete genomeSAMN08824419
CFSAN058605
GCA_003064365.2Complete genomeSAMN08822910
CFSAN058606
GCA_003064165.2Complete genomeSAMN08823084
CFSAN058620
GCA_003068145.2Complete genomeSAMN08822980
CFSAN058540
GCA_003068025.2Complete genomeSAMN08822719
CFSAN058545
GCA_003067445.2Complete genomeSAMN08886740
CFSAN058565
GCA_003067985.2Complete genomeSAMN08823090
CFSAN058588
GCA_003067925.2Complete genomeSAMN08824062
CFSAN058591
GCA_002263275.3ContigNOVO00000000
SAMN05195938
CFSAN051043
GCA_002241555.3ContigNLCA00000000
SAMN05195928
CFSAN051033
GCA_002682815.3ContigNMUD00000000
SAMN05195916
CFSAN051021
GCA_002241855.3ContigNLCH00000000
SAMN05195937
CFSAN051042
GCA_002263315.2ContigNOVM00000000
SAMN05195934
CFSAN051039
GCA_002263325.2ContigNOVN00000000
SAMN05195936
CFSAN051041
GCA_003579785.1ContigQWDO00000000
SAMN05195899
CFSAN051004
GCA_003579805.1ContigQWDP00000000
SAMN04962051
CFSAN044978
GCA_002263135.2ContigNOVL00000000
SAMN05195920
CFSAN051025
GCA_003431525.1ContigQVXM00000000
SAMN05195898
CFSAN051003
GCA_003431535.1ContigQVXN00000000
SAMN05195894
CFSAN050999
GCA_003431455.1ContigQVXI00000000
SAMN05195910
CFSAN051015
GCA_003431445.1ContigQVXL00000000
SAMN05195906
CFSAN051011
GCA_003431475.1ContigQVXJ00000000
SAMN05195909
CFSAN051014
GCA_003431465.1ContigQVXK00000000
SAMN05195908
CFSAN051013
GCA_003068635.1ContigQARB00000000
SAMN08824598
CFSAN058492
GCA_003068625.1ContigQARD00000000
SAMN08824585
CFSAN058490
GCA_003068605.1ContigQARC00000000
SAMN08824569
CFSAN058491
GCA_003068585.1ContigQAQZ00000000
SAMN08824565
CFSAN058494
GCA_003068565.1ContigQAQY00000000
SAMN08824444
CFSAN058495
GCA_003068545.1ContigQAQX00000000
SAMN08822999
CFSAN058496
GCA_003068525.1ContigQAQW00000000
SAMN08823165
CFSAN058497
GCA_003068505.1ContigQAQV00000000
SAMN08823124
CFSAN058498
GCA_003068485.1ContigQAQU00000000
SAMN08823106
CFSAN058499
GCA_003068465.1ContigQAQT00000000
SAMN08823151
CFSAN058502
GCA_003068445.1ContigQAQS00000000
SAMN08823453
CFSAN058503
GCA_003068415.1ContigQAQP00000000
SAMN08823283
CFSAN058506
GCA_003068405.1ContigQAQQ00000000
SAMN08823135
CFSAN058505
GCA_003068385.1ContigQAQR00000000
SAMN08824632
CFSAN058504
GCA_003068365.1ContigQAQM00000000
SAMN08824571
CFSAN058529
GCA_003068345.1ContigQAQL00000000
SAMN08824575
CFSAN058530
GCA_003068325.1ContigQAQN00000000
SAMN08822912
CFSAN058528
GCA_003068305.1ContigQAQJ00000000
SAMN08823126
CFSAN058532
GCA_003068285.1ContigQAQK00000000
SAMN08824566
CFSAN058531
GCA_003068265.1ContigQAQH00000000
SAMN08824579
CFSAN058534
GCA_003068235.1ContigQAQI00000000
SAMN08824588
CFSAN058533
GCA_003068225.1ContigQAQF00000000
SAMN08824617
CFSAN058536
GCA_003068205.1ContigQAQG00000000
SAMN08822977
CFSAN058535
GCA_003068175.1ContigQAQE00000000
SAMN08824614
CFSAN058537
GCA_003068165.1ContigQAQD00000000
SAMN08824592
CFSAN058538
GCA_003068125.1ContigQAQA00000000
SAMN08822956
CFSAN058541
GCA_003068105.1ContigQAQC00000000
SAMN08822938
CFSAN058539
GCA_003068055.1ContigQAPY00000000
SAMN08822659
CFSAN058543
GCA_003068045.1ContigQAPX00000000
SAMN08822673
CFSAN058544
GCA_003068065.1ContigQAPZ00000000
SAMN08823023
CFSAN058542
GCA_003068005.1ContigQAPV00000000
SAMN08822824
CFSAN058546
GCA_003067965.1ContigQAPT00000000
SAMN08822937
CFSAN058589
GCA_003067945.1ContigQAPS00000000
SAMN08822924
CFSAN058590
GCA_003067905.1ContigQAPQ00000000
SAMN08823297
CFSAN058592
GCA_003067855.1ContigQAPN00000000
SAMN08823472
CFSAN058595
GCA_003067845.1ContigQAPP00000000
SAMN08823272
CFSAN058593
GCA_003067865.1ContigQAPO00000000
SAMN08823046
CFSAN058594
GCA_003067825.1ContigQAPM00000000
SAMN08823245
CFSAN058596
GCA_003067785.1ContigQAPL00000000
SAMN08823155
CFSAN058597
GCA_003067795.1ContigQAPJ00000000
SAMN08823420
CFSAN058599
GCA_003067745.1ContigQAPI00000000
SAMN08823136
CFSAN058600
GCA_003067725.1ContigQAPH00000000
SAMN08823152
CFSAN058601
GCA_003067505.1ContigQBII00000000
SAMN05195907
CFSAN051012
GCA_003067485.1ContigQBIH00000000
SAMN05195911
CFSAN051016
GCA_003067465.1ContigQBIF00000000
SAMN08886792
CFSAN058566
GCA_003064465.1ContigQARV00000000
SAMN08822881
CFSAN058602
GCA_003064445.1ContigQARU00000000
SAMN08822995
CFSAN058603
GCA_003064425.1ContigQART00000000
SAMN08823044
CFSAN058604
GCA_003064385.1ContigQARQ00000000
SAMN08822880
CFSAN058607
GCA_003064345.1ContigQARP00000000
SAMN08822779
CFSAN058609
GCA_003064325.1ContigQARO00000000
SAMN08822816
CFSAN058610
GCA_003064305.1ContigQARN00000000
SAMN08822658
CFSAN058611
GCA_003064285.1ContigQARM00000000
SAMN08822723
CFSAN058612
GCA_003064265.1ContigQARK00000000
SAMN08823270
CFSAN058615
GCA_003064245.1ContigQARJ00000000
SAMN08823259
CFSAN058616
GCA_003064215.1ContigQARG00000000
SAMN08823956
CFSAN058619
GCA_003064205.1ContigQARH00000000
SAMN08823082
CFSAN058618
GCA_003064175.1ContigQARI00000000
SAMN08823092
CFSAN058617
GCA_003069385.1ContigQBJX00000000
SAMN08888087
CFSAN058568
GCA_002241615.2ContigNLBP00000000
SAMN05195915
CFSAN051020
GCA_002241435.2ContigNLBM00000000
SAMN05195912
CFSAN051017
GCA_002241535.2ContigNLBX00000000
SAMN05195925
CFSAN051030
GCA_002241635.2ContigNLBQ00000000
SAMN05195917
CFSAN051022
GCA_003071045.1ContigQBVA00000000
SAMN08822913
CFSAN058608
GCA_003071025.1ContigQBVB00000000
SAMN08887230
CFSAN058576
GCA_003069345.1ContigQBJV00000000
SAMN08887233
CFSAN058570
GCA_003069325.1ContigQBJW00000000
SAMN08887258
CFSAN058569
GCA_003069305.1ContigQBJU00000000
SAMN08888086
CFSAN058571
GCA_003069285.1ContigQBJT00000000
SAMN08887557
CFSAN058572
GCA_003069245.1ContigQBJO00000000
SAMN08887259
CFSAN058578
GCA_003069255.1ContigQBJS00000000
SAMN08887917
CFSAN058573
GCA_003069225.1ContigQBJN00000000
SAMN08888246
CFSAN058579
GCA_003069205.1ContigQBJQ00000000
SAMN08886802
CFSAN058575
GCA_003069185.1ContigQBJM00000000
SAMN08888094
CFSAN058580
GCA_003069155.1ContigQBJK00000000
SAMN08888243
CFSAN058582
GCA_003069145.1ContigQBJG00000000
SAMN08887775
CFSAN058587
GCA_003069125.1ContigQBJF00000000
SAMN08823069
CFSAN058621
GCA_003069105.1ContigQBIT00000000
SAMN05195892
CFSAN050997
GCA_003069085.1ContigQBIS00000000
SAMN05195893
CFSAN050998
GCA_003069065.1ContigQBIR00000000
SAMN05195895
CFSAN051000
GCA_003069045.1ContigQBIP00000000
SAMN05195897
CFSAN051002
GCA_003069025.1ContigQBIO00000000
SAMN05195900
CFSAN051005
GCA_003069005.1ContigQBIL00000000
SAMN05195903
CFSAN051008
GCA_003068985.1ContigQBIJ00000000
SAMN05195905
CFSAN051010
GCA_003068965.1ContigQBIN00000000
SAMN05195901
CFSAN051006
GCA_003068935.1ContigQBJY00000000
SAMN08887254
CFSAN058567
GCA_003068925.1ContigQBJR00000000
SAMN08887916
CFSAN058574
GCA_003068905.1ContigQBJJ00000000
SAMN08888247
CFSAN058583
GCA_003068885.1ContigQBJP00000000
SAMN08887558
CFSAN058577
GCA_003068845.1ContigQBJL00000000
SAMN08888242
CFSAN058581
GCA_003068865.1ContigQBJH00000000
SAMN08887766
CFSAN058586
GCA_003068825.1ContigQBJI00000000
SAMN08888244
CFSAN058584
GCA_003068805.1ContigQBIQ00000000
SAMN05195896
CFSAN051001
GCA_003068765.1ContigQBIM00000000
SAMN05195902
CFSAN051007
GCA_003068775.1ContigQBIK00000000
SAMN05195904
CFSAN051009
GCA_002241495.2ContigNLBS00000000
SAMN05195919
CFSAN051024
GCA_002241705.2ContigNLBT00000000
SAMN05195921
CFSAN051026
GCA_002241695.2ContigNLBY00000000
SAMN05195926
CFSAN051031
GCA_002241725.2ContigNLBV00000000
SAMN05195923
CFSAN051028
GCA_002241545.2ContigNLBW00000000
SAMN05195924
CFSAN051029
GCA_002241775.2ContigNLCC00000000
SAMN05195930
CFSAN051035
GCA_002241835.2ContigNLCG00000000
SAMN05195935
CFSAN051040
GCA_002241455.2ContigNLBN00000000
SAMN05195913
CFSAN051018
GCA_002241465.2ContigNLBR00000000
SAMN05195918
CFSAN051023
GCA_002241665.2ContigNLBO00000000
SAMN05195914
CFSAN051019
GCA_002241735.2ContigNLBZ00000000
SAMN05195927
CFSAN051032
GCA_002241515.2ContigNLBU00000000
SAMN05195922
CFSAN051027
GCA_002241795.2ContigNLCD00000000
SAMN05195931
CFSAN051036
GCA_002241595.2ContigNLCB00000000
SAMN05195929
CFSAN051034
GCA_002241655.2ContigNLCE00000000
SAMN05195932
CFSAN051037
GCA_002241805.2ContigNLCF00000000
SAMN05195933
CFSAN051038
GCA_003052425.1ContigQARA00000000
SAMN08824589
CFSAN058493
GCA_003052405.1ContigQAQO00000000
SAMN08822926
CFSAN058507
GCA_006216565.1ContigAAEXFA000000000
SAMN11941236
CFSAN058550
GCA_006216525.1ContigAAEXEJ000000000
SAMN11940337
CFSAN058557
GCA_006216485.1ContigAAEXEY000000000
SAMN11942450
CFSAN058560
GCA_006216465.1ContigAAEXEL000000000
SAMN11940224
CFSAN058553
GCA_006216445.1ContigAAEXEW000000000
SAMN11942411
CFSAN058547
GCA_006216345.1ContigAAEXES000000000
SAMN11941241
CFSAN058558
GCA_006216215.1ContigAAEXER000000000
SAMN11940354
CFSAN058548
GCA_006215595.1ContigAAEXDF000000000
SAMN11940100
CFSAN058561
GCA_006295935.1ContigAAFBVX000000000
SAMN11942464
CFSAN058559
GCA_006295915.1ContigAAFBVN000000000
SAMN11942446
CFSAN058555
GCA_006295845.1ContigAAFBVT000000000
SAMN11942412
CFSAN058552
GCA_006295805.1ContigAAFBVM000000000
SAMN11942426
CFSAN058556
GCA_006295795.1ContigAAFBVK000000000
SAMN11941227
CFSAN058551
GCA_006295755.1ContigAAFBVP000000000
SAMN11941242
CFSAN058563
GCA_006295715.1ContigAAFBVL000000000
SAMN11941218
CFSAN058585
GCA_006295375.1ContigAAFBVG000000000
SAMN11940223
CFSAN058554
GCA_006292995.1ContigAAFBUO000000000
SAMN11940064
CFSAN058562
GCA_032203585.1ContigABNCLY000000000
SAMN34566557
CFSAN058518
GCA_032203565.1ContigABNCLW000000000
SAMN34587800
CFSAN058521
GCA_032203525.1ContigABNCLX000000000
SAMN34587852
CFSAN058520
GCA_032203545.1ContigABNCLV000000000
SAMN34587790
CFSAN058549
GCA_032207385.1ContigABNCSS000000000
SAMN34587850
CFSAN058519
SRA Data Details
ParameterValue
Data volume, Gbases63
Data volume, Mbytes39226

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