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Prev_macu_OT_289_V1

Organism name:
Segatella maculosa OT 289 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OT 289
BioSample:
SAMN02463943
BioProject:
PRJNA64895
Submitter:
Broad Institute
Date:
2012/01/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000243015.1 (latest)
RefSeq assembly accession:
GCF_000243015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGEK01
Assembly method:
Newbler v. 2.1-PreRelease-4/28/2009
Genome coverage:
300.0x
Sequencing technology:
Illumina

IDs: 331988 [UID] 329988 [GenBank] 331988 [RefSeq]

See Genome Information for Segatella maculosa

There are 10 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Jacques Izard, Jessica M. Blanton, Jennifer Mathney, Anne C. Tanner and Floyd E. Dewhirst (Molecular Genetics, ... The Forsyth Institute, Boston, MA 02115, USA).
Bacteria provided by Jacques Izard, Jessica M. Blanton, Jennifer Mathney, Anne C. Tanner and Floyd E. Dewhirst (Molecular Genetics, The Forsyth Institute, Boston, MA 02115, USA).
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length3,151,214
Total ungapped length3,134,147
Gaps between scaffolds0
Number of scaffolds21
Scaffold N50322,660
Scaffold L504
Number of contigs54
Contig N5097,306
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,151,214213,134,147322,660330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Segatella maculosa OT 289Segatella maculosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000382385.1Segatella maculosa DSM 19339 = JCM 15638type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000382385.1Segatella maculosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2485.8681.25
Best-match type97.2485.8681.25

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna