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Prev_oulo_F0390_V1

Organism name:
Segatella oulorum F0390 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: F0390
BioSample:
SAMN02463847
BioProject:
PRJNA43117
Submitter:
Broad Institute
Date:
2011/09/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000224615.1 (latest)
RefSeq assembly accession:
GCF_000224615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADGI01
Assembly method:
Newbler v. 2.3-PostRelease-11/19/2009
Genome coverage:
44x
Sequencing technology:
454

IDs: 303528 [UID] 303448 [GenBank] 303528 [RefSeq]

See Genome Information for Segatella oulorum

There are 16 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Jacques Izard, Akila Ganesan, Oxana V. Baranova, Jessica M. Blanton, Anne C. Tanner and Floyd E. ... Dewhirst. (Molecular Genetics, The Forsyth Institute, Boston, MA 02115, USA).
Bacteria provided by Jacques Izard, Akila Ganesan, Oxana V. Baranova, Jessica M. Blanton, Anne C. Tanner and Floyd E. Dewhirst. (Molecular Genetics, The Forsyth Institute, Boston, MA 02115, USA). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length2,805,893
Total ungapped length2,788,455
Gaps between scaffolds0
Number of scaffolds16
Scaffold N501,512,165
Scaffold L501
Number of contigs81
Contig N5084,245
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,805,893162,788,4551,512,165650

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Segatella oulorum F0390Segatella oulorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900167385.1Segatella oulorumsuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900167385.1Segatella oulorumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2582.8981.62
Best-match type97.2582.8981.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna