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Source database (GenBank or RefSeq) File type

fLabMix1.1

Organism name:

Labrus mixtus (cuckoo wrasse)

BioSample:

SAMEA111562155

BioProject:

PRJEB68165

Submitter:

WELLCOME SANGER INSTITUTE

Date:

2023/11/05

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_963584025.1 (latest)

RefSeq assembly accession:

GCF_963584025.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

CAUZXJ01

Assembly method:

various

Genome coverage:

35x

Sequencing technology:

PacBio,Arima2

Linked assembly:

GCA_963583885.1 (alternate pseudohaplotype of diploid)

IDs: 19568931 [UID] 49727408 [GenBank] 50119738 [RefSeq]

See Genome Information for Labrus mixtus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_963584025.1	≠	GCF_963584025.1	fLabMix1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly fLabMix1.1 is based on 35x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length	740,563,171
Total ungapped length	740,449,157
Gaps between scaffolds	0
Number of scaffolds	324
Scaffold N50	30,403,003
Scaffold L50	12
Number of contigs	894
Contig N50	2,678,957
Contig L50	75
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	324

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OY757284.1	=	NC_083612.1	0
Chromosome 2	OY757285.1	=	NC_083613.1	0
Chromosome 3	OY757286.1	=	NC_083614.1	0
Chromosome 4	OY757287.1	=	NC_083615.1	0
Chromosome 5	OY757288.1	=	NC_083616.1	0
Chromosome 6	OY757289.1	=	NC_083617.1	0
Chromosome 7	OY757290.1	=	NC_083618.1	0
Chromosome 8	OY757291.1	=	NC_083619.1	0
Chromosome 9	OY757292.1	=	NC_083620.1	0
Chromosome 10	OY757293.1	=	NC_083621.1	0
Chromosome 11	OY757294.1	=	NC_083622.1	0
Chromosome 12	OY757295.1	=	NC_083623.1	0
Chromosome 13	OY757296.1	=	NC_083624.1	0
Chromosome 14	OY757297.1	=	NC_083625.1	0
Chromosome 15	OY757298.1	=	NC_083626.1	0
Chromosome 16	OY757299.1	=	NC_083627.1	0
Chromosome 17	OY757300.1	=	NC_083628.1	0
Chromosome 18	OY757301.1	=	NC_083629.1	0
Chromosome 19	OY757302.1	=	NC_083630.1	0
Chromosome 20	OY757303.1	=	NC_083631.1	0
Chromosome 21	OY757304.1	=	NC_083632.1	0
Chromosome 22	OY757305.1	=	NC_083633.1	0
Chromosome 23	OY757306.1	=	NC_083634.1	0
Chromosome 24	OY757307.1	=	NC_083635.1	0
unplaced	n/a	n/a	n/a	300

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	740,563,171	324	740,449,157	30,403,003	570
Chromosome 1	36,961,920	1	36,956,520	36,961,920	27
Chromosome 2	35,931,179	1	35,925,979	35,931,179	26
Chromosome 3	35,199,396	1	35,194,596	35,199,396	24
Chromosome 4	33,816,270	1	33,813,070	33,816,270	16
Chromosome 5	33,483,846	1	33,479,246	33,483,846	23
Chromosome 6	33,127,595	1	33,121,795	33,127,595	29
Chromosome 7	32,154,098	1	32,148,698	32,154,098	27
Chromosome 8	31,328,383	1	31,323,783	31,328,383	23
Chromosome 9	31,243,877	1	31,239,477	31,243,877	22
Chromosome 10	30,829,822	1	30,824,208	30,829,822	28
Chromosome 11	30,722,800	1	30,717,600	30,722,800	26
Chromosome 12	30,403,003	1	30,396,803	30,403,003	31
Chromosome 13	29,663,367	1	29,659,367	29,663,367	20
Chromosome 14	29,553,134	1	29,547,334	29,553,134	29
Chromosome 15	29,316,696	1	29,312,696	29,316,696	20
Chromosome 16	27,878,764	1	27,873,364	27,878,764	27
Chromosome 17	27,054,234	1	27,049,834	27,054,234	22
Chromosome 18	26,311,930	1	26,307,130	26,311,930	24
Chromosome 19	25,295,034	1	25,290,634	25,295,034	22
Chromosome 20	24,949,526	1	24,945,126	24,949,526	22
Chromosome 21	24,808,162	1	24,805,362	24,808,162	14
Chromosome 22	22,081,889	1	22,076,689	22,081,889	26
Chromosome 23	21,671,947	1	21,668,547	21,671,947	17
Chromosome 24	14,067,755	1	14,065,555	14,067,755	11
unplaced	42,708,544	300	42,705,744	490,000	14

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fLabMix1.1

See Genome Information for Labrus mixtus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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