mGloMel1.1

Organism name:: Globicephala melas (long-finned pilot whale)
BioSample:: SAMEA111380538
BioProject:: PRJEB65996
Submitter:: WELLCOME SANGER INSTITUTE
Date:: 2023/09/21
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_963455315.1 (latest)
RefSeq assembly accession:: GCF_963455315.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CAUOHG01
Assembly method:: various
Genome coverage:: 29x
Sequencing technology:: PacBio,Arima2

IDs: 18734181 [UID] 47831988 [GenBank] 49056308 [RefSeq]

See Genome Information for Globicephala melas

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_963455315.1	=	GCF_963455315.1	mGloMel1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly mGloMel1.1 is based on 29x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosomes X and Y were assigned by read coverage statistics and synteny to GCA_949987515.1  more

Global statistics

Total sequence length	2,651,292,441
Total ungapped length	2,651,075,824
Gaps between scaffolds	0
Number of scaffolds	993
Scaffold N50	105,087,932
Scaffold L50	10
Number of contigs	2,077
Contig N50	3,290,841
Contig L50	247
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	993

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OY734039.1	=	NC_083314.1	0
Chromosome 2	OY734040.1	=	NC_083315.1	0
Chromosome 3	OY734041.1	=	NC_083316.1	0
Chromosome 4	OY734042.1	=	NC_083317.1	0
Chromosome 5	OY734043.1	=	NC_083318.1	0
Chromosome 6	OY734045.1	=	NC_083319.1	0
Chromosome 7	OY734046.1	=	NC_083320.1	0
Chromosome 8	OY734047.1	=	NC_083321.1	0
Chromosome 9	OY734048.1	=	NC_083322.1	0
Chromosome 10	OY734049.1	=	NC_083323.1	0
Chromosome 11	OY734050.1	=	NC_083324.1	0
Chromosome 12	OY734051.1	=	NC_083325.1	0
Chromosome 13	OY734052.1	=	NC_083326.1	0
Chromosome 14	OY734053.1	=	NC_083327.1	0
Chromosome 15	OY734054.1	=	NC_083328.1	0
Chromosome 16	OY734055.1	=	NC_083329.1	0
Chromosome 17	OY734056.1	=	NC_083330.1	0
Chromosome 18	OY734057.1	=	NC_083331.1	0
Chromosome 19	OY734058.1	=	NC_083332.1	0
Chromosome 20	OY734059.1	=	NC_083333.1	0
Chromosome 21	OY734060.1	=	NC_083334.1	0
Chromosome X	OY734044.1	=	NC_083335.1	0
Chromosome Y	OY734061.1	=	NC_083336.1	0
unplaced	n/a	n/a	n/a	969

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,651,276,051	992	2,651,059,434	105,087,932	1,084
Chromosome 1	188,105,751	1	188,087,151	188,105,751	93
Chromosome 2	178,822,716	1	178,806,316	178,822,716	82
Chromosome 3	171,321,819	1	171,303,419	171,321,819	92
Chromosome 4	146,482,793	1	146,468,593	146,482,793	71
Chromosome 5	140,215,592	1	140,203,992	140,215,592	58
Chromosome 6	115,436,731	1	115,427,531	115,436,731	46
Chromosome 7	115,184,063	1	115,175,863	115,184,063	41
Chromosome 8	108,122,213	1	108,109,196	108,122,213	66
Chromosome 9	105,087,932	1	105,081,332	105,087,932	33
Chromosome 10	103,043,514	1	103,035,914	103,043,514	38
Chromosome 11	102,702,331	1	102,693,931	102,702,331	42
Chromosome 12	90,742,398	1	90,736,198	90,742,398	31
Chromosome 13	89,851,358	1	89,842,958	89,851,358	42
Chromosome 14	88,668,195	1	88,661,795	88,668,195	32
Chromosome 15	86,728,357	1	86,719,157	86,728,357	46
Chromosome 16	83,953,560	1	83,944,560	83,953,560	45
Chromosome 17	79,948,850	1	79,942,250	79,948,850	33
Chromosome 18	79,698,210	1	79,691,810	79,698,210	32
Chromosome 19	62,923,459	1	62,916,059	62,923,459	37
Chromosome 20	58,784,140	1	58,777,340	58,784,140	34
Chromosome 21	35,598,942	1	35,597,142	35,598,942	9
Chromosome X	125,804,398	1	125,789,398	125,804,398	75
Chromosome Y	6,515,350	1	6,514,550	6,515,350	4
unplaced	287,533,379	969	287,532,979	627,148	2

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mGloMel1.1

See Genome Information for Globicephala melas

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear