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Source database (GenBank or RefSeq) File type

mMyoDau2.1

Organism name:

Myotis daubentonii (Daubenton's bat)

BioSample:

SAMEA9921455

BioProject:

PRJEB65246

Submitter:

WELLCOME SANGER INSTITUTE

Date:

2023/08/20

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_963259705.1 (latest)

RefSeq assembly accession:

GCF_963259705.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

CAUJLG01

Assembly method:

various

Genome coverage:

40x

Sequencing technology:

PacBio,Arima2

Linked assembly:

GCA_963242275.1 (alternate pseudohaplotype of diploid)

IDs: 18197101 [UID] 46508758 [GenBank] 47365768 [RefSeq]

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_963259705.1	≠	GCF_963259705.1	mMyoDau2.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly mMyoDau2.1 is based on 40x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length	2,127,807,131
Total ungapped length	2,127,587,331
Gaps between scaffolds	0
Number of scaffolds	121
Scaffold N50	102,234,773
Scaffold L50	7
Number of contigs	1,220
Contig N50	3,062,752
Contig L50	213
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	121

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OY725359.1	=	NC_081840.1	1
Chromosome 2	OY725360.1	=	NC_081841.1	0
Chromosome 3	OY725361.1	=	NC_081842.1	0
Chromosome 4	OY725363.1	=	NC_081843.1	0
Chromosome 5	OY725364.1	=	NC_081844.1	0
Chromosome 6	OY725365.1	=	NC_081845.1	0
Chromosome 7	OY725366.1	=	NC_081846.1	0
Chromosome 8	OY725367.1	=	NC_081847.1	0
Chromosome 9	OY725368.1	=	NC_081848.1	0
Chromosome 10	OY725369.1	=	NC_081849.1	0
Chromosome 11	OY725370.1	=	NC_081850.1	0
Chromosome 12	OY725371.1	=	NC_081851.1	0
Chromosome 13	OY725372.1	=	NC_081852.1	0
Chromosome 14	OY725373.1	=	NC_081853.1	0
Chromosome 15	OY725374.1	=	NC_081854.1	0
Chromosome 16	OY725375.1	=	NC_081855.1	0
Chromosome 17	OY725376.1	=	NC_081856.1	0
Chromosome 18	OY725377.1	=	NC_081857.1	0
Chromosome 19	OY725378.1	=	NC_081858.1	0
Chromosome 20	OY725379.1	=	NC_081859.1	0
Chromosome 21	OY725380.1	=	NC_081860.1	0
Chromosome X	OY725362.1	=	NC_081861.1	0
Chromosome Y	OY725381.1	=	NC_081862.1	0
unplaced	n/a	n/a	n/a	97

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,127,807,131	121	2,127,587,331	102,234,773	1,099	0
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	234,981,664234,112,155869,509	211	234,960,464234,090,955869,509	234,112,155234,112,155869,509	1061060	000
Chromosome 2	Assembled molecule	222,567,163	1	222,543,963	222,567,163	116	0
Chromosome 3	Assembled molecule	220,080,800	1	220,055,800	220,080,800	125	0
Chromosome 4	Assembled molecule	116,923,786	1	116,910,586	116,923,786	66	0
Chromosome 5	Assembled molecule	111,432,089	1	111,420,889	111,432,089	56	0
Chromosome 6	Assembled molecule	102,234,773	1	102,225,773	102,234,773	45	0
Chromosome 7	Assembled molecule	97,173,998	1	97,164,198	97,173,998	49	0
Chromosome 8	Assembled molecule	95,744,235	1	95,734,435	95,744,235	49	0
Chromosome 9	Assembled molecule	86,660,771	1	86,652,371	86,660,771	42	0
Chromosome 10	Assembled molecule	86,425,250	1	86,416,650	86,425,250	43	0
Chromosome 11	Assembled molecule	82,559,787	1	82,551,987	82,559,787	39	0
Chromosome 12	Assembled molecule	80,362,818	1	80,356,818	80,362,818	30	0
Chromosome 13	Assembled molecule	64,611,165	1	64,606,365	64,611,165	24	0
Chromosome 14	Assembled molecule	59,697,952	1	59,689,752	59,697,952	41	0
Chromosome 15	Assembled molecule	59,549,911	1	59,539,711	59,549,911	51	0
Chromosome 16	Assembled molecule	57,790,901	1	57,785,101	57,790,901	29	0
Chromosome 17	Assembled molecule	54,852,286	1	54,845,886	54,852,286	32	0
Chromosome 18	Assembled molecule	44,301,205	1	44,298,605	44,301,205	13	0
Chromosome 19	Assembled molecule	29,699,348	1	29,695,948	29,699,348	17	0
Chromosome 20	Assembled molecule	18,696,202	1	18,694,002	18,696,202	11	0
Chromosome 21	Assembled molecule	18,477,076	1	18,473,876	18,477,076	16	0
Chromosome X	Assembled molecule	140,352,115	1	140,335,115	140,352,115	85	0
Chromosome Y	Assembled molecule	17,193,225	1	17,190,425	17,193,225	14	0
unplaced	Assembled molecule	25,438,611	97	25,438,611	529,000	0	0

Assembly

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mMyoDau2.1

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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