Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

mDelDel1.1

Organism name:

Delphinus delphis (saddleback dolphin)

BioSample:

SAMEA111380534

BioProject:

PRJEB61571

Submitter:

WELLCOME SANGER INSTITUTE

Date:

2023/05/01

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_949987515.1 (latest)

RefSeq assembly accession:

GCF_949987515.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

CATLKE01

Assembly method:

various

Genome coverage:

29x

Sequencing technology:

PacBio,Arima2

Linked assembly:

GCA_949987525.1 (alternate pseudohaplotype of diploid)

IDs: 16814111 [UID] 43202448 [GenBank] 48212518 [RefSeq]

See Genome Information for Delphinus delphis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_949987515.1	≠	GCF_949987515.1	mDelDel1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly mDelDel1.1 is based on 29x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using TreeVal. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length	2,663,516,986
Total ungapped length	2,663,323,555
Gaps between scaffolds	0
Number of scaffolds	630
Scaffold N50	107,080,983
Scaffold L50	10
Number of contigs	1,598
Contig N50	3,627,551
Contig L50	235
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	630

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OX465326.1	=	NC_082683.1	0
Chromosome 2	OX465327.1	=	NC_082684.1	0
Chromosome 3	OX465328.1	=	NC_082685.1	0
Chromosome 4	OX465329.1	=	NC_082686.1	0
Chromosome 5	OX465330.1	=	NC_082687.1	0
Chromosome 6	OX465332.1	=	NC_082688.1	0
Chromosome 7	OX465333.1	=	NC_082689.1	0
Chromosome 8	OX465334.1	=	NC_082690.1	0
Chromosome 9	OX465335.1	=	NC_082691.1	0
Chromosome 10	OX465336.1	=	NC_082692.1	0
Chromosome 11	OX465337.1	=	NC_082693.1	0
Chromosome 12	OX465338.1	=	NC_082694.1	0
Chromosome 13	OX465339.1	=	NC_082695.1	0
Chromosome 14	OX465340.1	=	NC_082696.1	0
Chromosome 15	OX465341.1	=	NC_082697.1	0
Chromosome 16	OX465342.1	=	NC_082698.1	0
Chromosome 17	OX465343.1	=	NC_082699.1	0
Chromosome 18	OX465344.1	=	NC_082700.1	0
Chromosome 19	OX465345.1	=	NC_082701.1	0
Chromosome 20	OX465346.1	=	NC_082702.1	0
Chromosome 21	OX465347.1	=	NC_082703.1	0
Chromosome X	OX465331.1	=	NC_082704.1	0
Chromosome Y	OX465348.1	=	NC_082705.1	0
unplaced	n/a	n/a	n/a	607

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,663,516,986	630	2,663,323,555	107,080,983	968
Chromosome 1	184,867,555	1	184,849,555	184,867,555	90
Chromosome 2	178,365,832	1	178,351,432	178,365,832	72
Chromosome 3	173,057,467	1	173,042,067	173,057,467	77
Chromosome 4	144,519,012	1	144,506,212	144,519,012	64
Chromosome 5	139,213,793	1	139,204,193	139,213,793	48
Chromosome 6	116,596,928	1	116,586,528	116,596,928	52
Chromosome 7	115,536,282	1	115,526,882	115,536,282	47
Chromosome 8	110,534,049	1	110,522,649	110,534,049	57
Chromosome 9	107,080,983	1	107,074,383	107,080,983	33
Chromosome 10	104,912,809	1	104,904,609	104,912,809	41
Chromosome 11	102,446,893	1	102,440,093	102,446,893	34
Chromosome 12	89,892,549	1	89,886,949	89,892,549	28
Chromosome 13	89,805,933	1	89,799,133	89,805,933	34
Chromosome 14	88,847,605	1	88,842,605	88,847,605	25
Chromosome 15	88,040,457	1	88,032,626	88,040,457	40
Chromosome 16	85,328,887	1	85,320,687	85,328,887	41
Chromosome 17	80,666,059	1	80,659,259	80,666,059	34
Chromosome 18	78,820,512	1	78,814,112	78,820,512	32
Chromosome 19	60,213,694	1	60,209,094	60,213,694	23
Chromosome 20	59,470,159	1	59,464,359	59,470,159	29
Chromosome 21	35,591,597	1	35,589,397	35,591,597	11
Chromosome X	126,479,092	1	126,468,092	126,479,092	55
Chromosome Y	4,078,762	1	4,078,562	4,078,762	1
unplaced	299,150,077	607	299,150,077	1,214,000	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

mDelDel1.1

See Genome Information for Delphinus delphis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics