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PerEre_H2_v1

Organism name:
Peromyscus eremicus (cactus mouse)
BioSample:
SAMEA112839419
BioProject:
PRJEB60916
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2023/04/08
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_949786415.1 (latest)
RefSeq assembly accession:
GCF_949786415.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CATKUO01
Assembly method:
hifiasm 0.16.1-r375
Genome coverage:
40x
Sequencing technology:
Pacbio

IDs: 16582531 [UID] 42661268 [GenBank] 46554668 [RefSeq]

See Genome Information for Peromyscus eremicus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,916,563,079
Total ungapped length2,916,042,479
Gaps between scaffolds0
Number of scaffolds4,297
Scaffold N5097,176,920
Scaffold L5011
Number of contigs6,900
Contig N501,332,236
Contig L50436
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)4,297

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_949786414.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OX460394.1=NC_081416.10
Chromosome 2OX460395.1=NC_081417.10
Chromosome 3OX460396.1=NC_081418.10
Chromosome 4OX460397.1=NC_081419.10
Chromosome 5OX460398.1=NC_081420.10
Chromosome 6OX460399.1=NC_081421.10
Chromosome 7OX460400.1=NC_081422.10
Chromosome 8aOX460401.1=NC_081423.10
Chromosome 8bOX460402.1=NC_081424.10
Chromosome 9OX460403.1=NC_081425.10
Chromosome 10OX460404.1=NC_081426.10
Chromosome 11OX460405.1=NC_081427.10
Chromosome 12OX460406.1=NC_081428.10
Chromosome 13OX460407.1=NC_081429.10
Chromosome 14OX460408.1=NC_081430.10
Chromosome 15OX460409.1=NC_081431.10
Chromosome 16_21OX460410.1=NC_081432.10
Chromosome 17OX460411.1=NC_081433.10
Chromosome 18OX460412.1=NC_081434.10
Chromosome 19OX460413.1=NC_081435.10
Chromosome 20OX460414.1=NC_081436.10
Chromosome 22OX460415.1=NC_081437.10
Chromosome 23OX460416.1=NC_081438.10
Chromosome XOX460417.1=NC_081439.10
unplacedn/an/an/a4,272

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,916,547,0914,2962,916,026,49197,176,9202,6030
Chromosome 1200,138,2321200,092,832200,138,2322270
Chromosome 2165,145,2691165,110,069165,145,2691760
Chromosome 3157,893,2891157,863,289157,893,2891500
Chromosome 4153,272,6021153,243,402153,272,6021460
Chromosome 5137,123,8011137,091,401137,123,8011620
Chromosome 6130,601,2811130,573,881130,601,2811370
Chromosome 7118,283,3021118,262,502118,283,3021040
Chromosome 8a104,308,3861104,285,386104,308,3861150
Chromosome 8b63,533,837163,522,63763,533,837560
Chromosome 9112,775,5581112,752,758112,775,5581140
Chromosome 1097,176,920197,160,92097,176,920800
Chromosome 1176,073,589176,059,98976,073,589680
Chromosome 1280,691,135180,677,13580,691,135700
Chromosome 1363,759,314163,744,71463,759,314730
Chromosome 1485,095,577185,074,77785,095,5771040
Chromosome 1592,504,062192,485,86292,504,062910
Chromosome 16_2168,577,656168,560,65668,577,656850
Chromosome 1761,371,839161,356,43961,371,839770
Chromosome 1846,485,942146,471,74246,485,942710
Chromosome 1977,432,835177,416,63577,432,835810
Chromosome 2066,778,104166,760,50466,778,104880
Chromosome 2242,966,149142,956,54942,966,149480
Chromosome 2343,352,599143,334,39943,352,599910
Chromosome X134,056,8131134,030,613134,056,8131310
unplaced537,149,0004,272537,137,400206,580580
MoleculeTotal
Length
Mitochondrion MT15,988