Ssal_v3.1

Organism name:: Salmo salar (Atlantic salmon)
BioSample:: SAMEA8062739
BioProject:: PRJEB43080
Submitter:: NORWEGIAN UNIVERSITY OF LIFE SCIENCES
Date:: 2021/04/21
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_905237065.2 (latest)
RefSeq assembly accession:: GCF_905237065.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CAJNNT02
Genome coverage:: 70x

IDs: 9920591 [UID] 26439548 [GenBank] 30587258 [RefSeq]

See Genome Information for Salmo salar

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_905237065.2	=	GCF_905237065.1	Ssal_v3.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_905237065.1	n/a	n/a	Ssal_v3	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	2,756,584,103
Total ungapped length	2,756,563,003
Gaps between scaffolds	211
Number of scaffolds	4,222
Scaffold N50	28,058,890
Scaffold L50	33
Number of contigs	4,222
Contig N50	28,058,890
Contig L50	33
Total number of chromosomes and plasmids	29
Number of component sequences (WGS or clone)	4,222

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome ssa01	HG993260.1	=	NC_059442.1	0
Chromosome ssa02	HG993261.1	=	NC_059443.1	0
Chromosome ssa03	HG993262.1	=	NC_059444.1	0
Chromosome ssa04	HG993263.1	=	NC_059445.1	0
Chromosome ssa05	HG993264.1	=	NC_059446.1	0
Chromosome ssa06	HG993265.1	=	NC_059447.1	0
Chromosome ssa07	HG993266.1	=	NC_059448.1	0
Chromosome ssa08	HG993267.1	=	NC_059449.1	0
Chromosome ssa09	HG993268.2	=	NC_059450.1	0
Chromosome ssa10	HG993269.1	=	NC_059451.1	0
Chromosome ssa11	HG993270.2	=	NC_059452.1	0
Chromosome ssa12	HG993271.1	=	NC_059453.1	0
Chromosome ssa13	HG993272.1	=	NC_059454.1	0
Chromosome ssa14	HG993273.1	=	NC_059455.1	0
Chromosome ssa15	HG993274.1	=	NC_059456.1	0
Chromosome ssa16	HG993275.1	=	NC_059457.1	0
Chromosome ssa17	HG993276.1	=	NC_059458.1	0
Chromosome ssa18	HG993277.2	=	NC_059459.1	0
Chromosome ssa19	HG993278.1	=	NC_059460.1	0
Chromosome ssa20	HG993279.1	=	NC_059461.1	0
Chromosome ssa21	HG993280.1	=	NC_059462.1	0
Chromosome ssa22	HG993281.1	=	NC_059463.1	0
Chromosome ssa23	HG993282.1	=	NC_059464.1	0
Chromosome ssa24	HG993283.1	=	NC_059465.1	0
Chromosome ssa25	HG993284.1	=	NC_059466.1	0
Chromosome ssa26	HG993285.2	=	NC_059467.1	0
Chromosome ssa27	HG993286.1	=	NC_059468.1	0
Chromosome ssa28	HG993287.1	=	NC_059469.1	0
Chromosome ssa29	HG993288.1	=	NC_059470.1	0
unplaced	n/a	n/a	n/a	3,982

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Unspanned Gaps
All	2,756,584,103	4,222	2,756,563,003	28,058,890	211
Chromosome ssa01	174,498,729	19	174,496,929	44,697,059	18
Chromosome ssa02	95,481,959	11	95,480,959	17,782,124	10
Chromosome ssa03	105,780,080	9	105,779,280	31,127,273	8
Chromosome ssa04	90,536,438	11	90,535,438	53,718,161	10
Chromosome ssa05	92,788,608	7	92,788,008	27,354,351	6
Chromosome ssa06	96,060,288	9	96,059,488	28,058,890	8
Chromosome ssa07	68,862,998	10	68,862,098	15,117,803	9
Chromosome ssa08	28,860,523	9	28,859,723	7,891,483	8
Chromosome ssa09	161,282,225	13	161,281,025	39,783,233	12
Chromosome ssa10	125,877,811	10	125,876,911	31,250,594	9
Chromosome ssa11	111,868,677	13	111,867,477	32,461,493	12
Chromosome ssa12	101,677,876	5	101,677,476	26,412,542	4
Chromosome ssa13	114,417,674	5	114,417,274	98,719,649	4
Chromosome ssa14	101,980,477	13	101,979,277	10,692,344	12
Chromosome ssa15	110,670,232	6	110,669,732	34,361,156	5
Chromosome ssa16	96,486,271	7	96,485,671	55,505,421	6
Chromosome ssa17	87,489,397	12	87,488,297	24,005,900	11
Chromosome ssa18	84,084,598	18	84,082,898	20,797,958	17
Chromosome ssa19	88,107,222	11	88,106,222	21,372,856	10
Chromosome ssa20	96,847,506	11	96,846,506	13,867,192	10
Chromosome ssa21	59,819,933	7	59,819,333	51,487,460	6
Chromosome ssa22	63,823,863	3	63,823,663	48,515,998	2
Chromosome ssa23	52,460,201	3	52,460,001	39,389,991	2
Chromosome ssa24	49,354,470	3	49,354,270	43,028,236	2
Chromosome ssa25	54,385,492	4	54,385,192	49,097,036	3
Chromosome ssa26	55,994,222	5	55,993,822	40,504,487	4
Chromosome ssa27	45,305,548	2	45,305,448	37,850,155	1
Chromosome ssa28	41,468,476	2	41,468,376	34,582,315	1
Chromosome ssa29	43,051,128	2	43,051,028	42,160,811	1
unplaced	257,261,181	3,982	257,261,181	161,861	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Ssal_v3.1

See Genome Information for Salmo salar

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics