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ilVanAtal1.2

Organism name:
Vanessa atalanta (red admiral)
BioSample:
SAMEA7523145
BioProject:
PRJEB41956
Submitter:
Wellcome Sanger Institute
Date:
2021/09/28
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_905147765.2 (latest)
RefSeq assembly accession:
GCF_905147765.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CAJHWX02
Genome coverage:
34x
Linked assembly:
GCA_905147705.2 (alternate pseudohaplotype of diploid)

IDs: 11023351 [UID] 29135278 [GenBank] 32549438 [RefSeq]

See Genome Information for Vanessa atalanta

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The assembly ilVanAtal1.2 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length370,420,815
Total ungapped length370,417,233
Gaps between scaffolds0
Number of scaffolds141
Scaffold N5012,792,537
Scaffold L5014
Number of contigs159
Contig N5012,152,710
Contig L5014
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)141

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_905147764.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LR990550.1=NC_061871.10
Chromosome 2LR990551.1=NC_061872.10
Chromosome 3LR990552.2=NC_061873.10
Chromosome 4LR990553.2=NC_061874.10
Chromosome 5LR990554.1=NC_061875.10
Chromosome 6LR990555.1=NC_061876.10
Chromosome 7LR990556.1=NC_061877.10
Chromosome 8LR990557.1=NC_061878.10
Chromosome 9LR990558.1=NC_061879.10
Chromosome 10LR990559.2=NC_061880.10
Chromosome 11LR990560.1=NC_061881.10
Chromosome 12LR990561.1=NC_061882.10
Chromosome 13LR990562.1=NC_061883.10
Chromosome 14LR990563.1=NC_061884.10
Chromosome 15LR990564.1=NC_061885.10
Chromosome 16LR990565.1=NC_061886.10
Chromosome 17LR990566.1=NC_061887.10
Chromosome 18LR990567.2=NC_061888.10
Chromosome 19LR990568.1=NC_061889.10
Chromosome 20LR990569.1=NC_061890.10
Chromosome 21LR990570.1=NC_061891.10
Chromosome 22LR990571.1=NC_061892.10
Chromosome 23LR990572.1=NC_061893.10
Chromosome 24LR990573.1=NC_061894.10
Chromosome 25LR990574.1=NC_061895.10
Chromosome 26LR990575.1=NC_061896.10
Chromosome 27LR990577.1=NC_061897.10
Chromosome 28LR990578.1=NC_061898.10
Chromosome 29LR990579.1=NC_061899.10
Chromosome 30LR990580.1=NC_061900.10
Chromosome WLR990576.2=NC_061901.11
Chromosome ZLR990549.1=NC_061902.10
unplacedn/an/an/a108

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule370,420,815141370,417,23312,792,537180
Chromosome 1Assembled molecule15,001,121115,001,12115,001,12100
Chromosome 2Assembled molecule14,662,588114,662,08814,662,58810
Chromosome 3Assembled molecule14,420,670114,420,67014,420,67000
Chromosome 4Assembled molecule14,397,421114,397,42114,397,42100
Chromosome 5Assembled molecule14,012,450114,012,45014,012,45000
Chromosome 6Assembled molecule13,779,080113,779,08013,779,08000
Chromosome 7Assembled molecule13,669,770113,669,35313,669,77020
Chromosome 8Assembled molecule13,647,547113,647,34713,647,54710
Chromosome 9Assembled molecule13,285,318113,285,31813,285,31800
Chromosome 10Assembled molecule13,090,155113,090,15513,090,15500
Chromosome 11Assembled molecule12,975,212112,975,21212,975,21200
Chromosome 12Assembled molecule12,796,898112,796,89812,796,89800
Chromosome 13Assembled molecule12,792,537112,792,53712,792,53700
Chromosome 14Assembled molecule12,690,559112,690,55912,690,55900
Chromosome 15Assembled molecule12,577,765112,577,76512,577,76500
Chromosome 16Assembled molecule12,152,710112,152,71012,152,71000
Chromosome 17Assembled molecule11,855,676111,855,67611,855,67600
Chromosome 18Assembled molecule11,602,024111,601,92411,602,02410
Chromosome 19Assembled molecule10,756,671110,756,67110,756,67100
Chromosome 20Assembled molecule10,620,528110,620,52810,620,52800
Chromosome 21Assembled molecule10,586,516110,586,51610,586,51600
Chromosome 22Assembled molecule9,886,27319,886,2739,886,27300
Chromosome 23Assembled molecule9,619,03319,619,0339,619,03300
Chromosome 24Assembled molecule9,263,38619,263,3869,263,38600
Chromosome 25Assembled molecule8,781,51718,781,5178,781,51700
Chromosome 26Assembled molecule8,427,49118,427,4918,427,49100
Chromosome 27Assembled molecule6,867,80016,867,8006,867,80000
Chromosome 28Assembled molecule6,381,36116,381,3616,381,36100
Chromosome 29Assembled molecule6,221,45616,221,4566,221,45600
Chromosome 30Assembled molecule5,422,24515,422,2145,422,24510
Chromosome WAllAssembled moleculeUnlocalized scaffolds9,664,4789,651,90712,5712119,662,1789,649,60712,5719,651,9079,651,90712,57110100000
Chromosome ZAssembled molecule16,450,097116,450,09716,450,09700
unplacedAssembled molecule2,062,4621082,062,42819,65420