mAcoRus1.1

Organism name:: Acomys russatus (golden spiny mouse)
BioSample:: SAMEA104026431
BioProject:: PRJEB39768
Submitter:: SC
Date:: 2020/08/21
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_903995435.1 (latest)
RefSeq assembly accession:: GCF_903995435.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CAJFAB01
Genome coverage:: 58x

IDs: 7946671 [UID] 21789358 [GenBank] 36641058 [RefSeq]

See Genome Information for Acomys russatus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_903995435.1	=	GCF_903995435.1	mAcoRus1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly mAcoRus1.1 is based on 58x PacBio data and BioNano data generated at the Wellcome Sanger Institute, and 33x Illumina data generated at the Earlham Institute. The assembly process included the following sequence of steps: initial PacBio assembly ... generation with Falcon-unzip, BioNano hybrid-scaffolding, gap filling with PBJelly, polishing using Arrow, polishing using Illumina data with Freebayes, and manual curation. Chromosome-scale scaffolds are built based on chromosome painting with Mus musculus fosmids, karyotype named as previously published (Baker et. al, 1979).  more

Global statistics

Total sequence length	2,301,522,284
Total ungapped length	2,293,568,117
Gaps between scaffolds	0
Number of scaffolds	623
Scaffold N50	66,475,698
Scaffold L50	14
Number of contigs	1,502
Contig N50	4,450,755
Contig L50	145
Total number of chromosomes and plasmids	33
Number of component sequences (WGS or clone)	623

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR877212.1	=	NC_067137.1	0
Chromosome 2	LR877213.1	=	NC_067138.1	0
Chromosome 3	LR877214.1	=	NC_067139.1	0
Chromosome 4	LR877215.1	=	NC_067140.1	0
Chromosome 5	LR877216.1	=	NC_067141.1	0
Chromosome 6	LR877217.1	=	NC_067142.1	0
Chromosome 7	LR877218.1	=	NC_067143.1	0
Chromosome 8	LR877219.1	=	NC_067144.1	0
Chromosome 9	LR877220.1	=	NC_067145.1	0
Chromosome 10	LR877221.1	=	NC_067146.1	0
Chromosome 11	LR877222.1	=	NC_067147.1	0
Chromosome 12	LR877223.1	=	NC_067148.1	0
Chromosome 13	LR877224.1	=	NC_067149.1	0
Chromosome 14	LR877225.1	=	NC_067150.1	0
Chromosome 15	LR877226.1	=	NC_067151.1	0
Chromosome 16	LR877227.1	=	NC_067152.1	0
Chromosome 17	LR877228.1	=	NC_067153.1	0
Chromosome 18	LR877229.1	=	NC_067154.1	0
Chromosome 19	LR877230.1	=	NC_067155.1	0
Chromosome 20	LR877231.1	=	NC_067156.1	0
Chromosome 21	LR877232.1	=	NC_067157.1	0
Chromosome 22	LR877233.1	=	NC_067158.1	0
Chromosome 23	LR877234.1	=	NC_067159.1	0
Chromosome 24	LR877235.1	=	NC_067160.1	0
Chromosome 25	LR877236.1	=	NC_067161.1	0
Chromosome 26	LR877237.1	=	NC_067162.1	0
Chromosome 27	LR877238.1	=	NC_067163.1	0
Chromosome 28	LR877239.1	=	NC_067164.1	0
Chromosome 29	LR877240.1	=	NC_067165.1	0
Chromosome 30	LR877241.1	=	NC_067166.1	0
Chromosome 31	LR877242.1	=	NC_067167.1	0
Chromosome 32	LR877243.1	=	NC_067168.1	0
Chromosome X	LR877244.1	=	NC_067169.1	0
unplaced	n/a	n/a	n/a	590

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,301,522,284	623	2,293,568,117	66,475,698	879
Chromosome 1	125,099,172	1	124,880,772	125,099,172	44
Chromosome 2	107,162,455	1	107,149,002	107,162,455	25
Chromosome 3	86,290,179	1	86,163,272	86,290,179	50
Chromosome 4	85,305,823	1	85,280,002	85,305,823	28
Chromosome 5	79,927,262	1	79,920,100	79,927,262	28
Chromosome 6	89,442,464	1	89,345,013	89,442,464	35
Chromosome 7	69,034,057	1	68,893,815	69,034,057	34
Chromosome 8	77,196,262	1	76,865,537	77,196,262	24
Chromosome 9	66,475,698	1	66,469,061	66,475,698	19
Chromosome 10	78,787,447	1	78,739,322	78,787,447	12
Chromosome 11	62,768,634	1	62,699,534	62,768,634	29
Chromosome 12	61,352,468	1	61,337,026	61,352,468	16
Chromosome 13	72,247,343	1	72,228,126	72,247,343	18
Chromosome 14	62,749,011	1	62,718,715	62,749,011	20
Chromosome 15	67,302,882	1	67,240,900	67,302,882	27
Chromosome 16	47,487,087	1	47,427,214	47,487,087	16
Chromosome 17	65,338,851	1	65,286,173	65,338,851	27
Chromosome 18	64,120,505	1	64,051,131	64,120,505	28
Chromosome 19	66,025,038	1	62,775,573	66,025,038	38
Chromosome 20	74,893,780	1	74,877,829	74,893,780	22
Chromosome 21	61,132,863	1	60,815,121	61,132,863	23
Chromosome 22	59,984,821	1	59,976,434	59,984,821	19
Chromosome 23	59,861,171	1	59,717,658	59,861,171	32
Chromosome 24	60,479,378	1	60,442,933	60,479,378	22
Chromosome 25	53,031,086	1	53,017,904	53,031,086	23
Chromosome 26	53,312,271	1	53,168,550	53,312,271	35
Chromosome 27	58,391,991	1	58,353,457	58,391,991	28
Chromosome 28	43,538,471	1	43,523,747	43,538,471	15
Chromosome 29	47,664,281	1	47,156,143	47,664,281	16
Chromosome 30	40,934,070	1	40,913,168	40,934,070	14
Chromosome 31	43,509,854	1	43,490,939	43,509,854	21
Chromosome 32	49,586,240	1	49,497,377	49,586,240	28
Chromosome X	124,657,616	1	123,632,059	124,657,616	55
unplaced	36,431,753	590	35,514,510	65,968	8

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mAcoRus1.1

See Genome Information for Acomys russatus

Pathogen Detection Resources

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