fAciRut3.2 maternal haplotype

Organism name:: Acipenser ruthenus (sterlet)
BioSample:: SAMEA5572864
BioProject:: PRJEB35912
Submitter:: Wellcome Sanger Institute
Date:: 2022/02/02
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_902713425.2 (latest)
RefSeq assembly accession:: GCF_902713425.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CACTIG02
Genome coverage:: 61x

IDs: 12718201 [UID] 33265168 [GenBank] 46319798 [RefSeq]

See Genome Information for Acipenser ruthenus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_902713425.2	=	GCF_902713425.1	fAciRut3.2 maternal haplotype	Chromosome	Latest GenBank, Latest RefSeq
GCA_902713425.1	n/a	n/a	fAciRut3.1 maternal haplotype	Scaffold	Replaced GenBank

Comment

The assembly fAciRut3.2 is based on 61x PacBio data and Dovetail Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: HiFi reads were trio-binned using trioCanu with k-mers from ... the Illumina-sequenced parents; haplotype-specific HiFi reads were assembled separately using Hifiasm; segregation of HiC reads using Canu's 'splitHaplotype' script and k-mers from the Illumina-sequenced parents; for each haplotype assembly, haplotype-specific and unclassified HiC reads were combined to construct scaffolds using pins. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length	1,899,810,788
Total ungapped length	1,899,724,488
Gaps between scaffolds	0
Number of scaffolds	1,731
Scaffold N50	42,723,358
Scaffold L50	12
Number of contigs	2,164
Contig N50	8,776,027
Contig L50	65
Total number of chromosomes and plasmids	61
Number of component sequences (WGS or clone)	1,731

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OV754670.1	=	NC_081189.1	0
Chromosome 2	OV754671.1	=	NC_081190.1	0
Chromosome 3	OV754672.1	=	NC_081191.1	0
Chromosome 4	OV754673.1	=	NC_081192.1	0
Chromosome 5	OV754674.1	=	NC_081193.1	0
Chromosome 6	OV754675.1	=	NC_081194.1	0
Chromosome 7	OV754676.1	=	NC_081195.1	0
Chromosome 8	OV754677.1	=	NC_081196.1	0
Chromosome 9	OV754678.1	=	NC_081197.1	0
Chromosome 10	OV754679.1	=	NC_081198.1	0
Chromosome 11	OV754680.1	=	NC_081199.1	0
Chromosome 12	OV754681.1	=	NC_081200.1	0
Chromosome 13	OV754682.1	=	NC_081201.1	0
Chromosome 14	OV754683.1	=	NC_081202.1	0
Chromosome 15	OV754684.1	=	NC_081203.1	0
Chromosome 16	OV754624.1	=	NC_081204.1	0
Chromosome 17	OV754625.1	=	NC_081205.1	0
Chromosome 18	OV754626.1	=	NC_081206.1	0
Chromosome 19	OV754627.1	=	NC_081207.1	0
Chromosome 20	OV754628.1	=	NC_081208.1	0
Chromosome 21	OV754629.1	=	NC_081209.1	0
Chromosome 22	OV754630.1	=	NC_081210.1	0
Chromosome 23	OV754631.1	=	NC_081211.1	0
Chromosome 24	OV754632.1	=	NC_081212.1	0
Chromosome 25	OV754633.1	=	NC_081213.1	0
Chromosome 26	OV754634.1	=	NC_081214.1	0
Chromosome 27	OV754635.1	=	NC_081215.1	0
Chromosome 28	OV754636.1	=	NC_081216.1	0
Chromosome 29	OV754637.1	=	NC_081217.1	0
Chromosome 30	OV754638.1	=	NC_081218.1	0
Chromosome 31	OV754639.1	=	NC_081219.1	0
Chromosome 32	OV754640.1	=	NC_081220.1	0
Chromosome 33	OV754641.1	=	NC_081221.1	0
Chromosome 34	OV754642.1	=	NC_081222.1	0
Chromosome 35	OV754643.1	=	NC_081223.1	0
Chromosome 36	OV754644.1	=	NC_081224.1	0
Chromosome 37	OV754645.1	=	NC_081225.1	0
Chromosome 38	OV754646.1	=	NC_081226.1	0
Chromosome 39	OV754647.1	=	NC_081227.1	0
Chromosome 40	OV754648.1	=	NC_081228.1	0
Chromosome 41	OV754649.1	=	NC_081229.1	0
Chromosome 42	OV754650.1	=	NC_081230.1	0
Chromosome 43	OV754651.1	=	NC_081231.1	0
Chromosome 44	OV754652.1	=	NC_081232.1	0
Chromosome 45	OV754653.1	=	NC_081233.1	0
Chromosome 46	OV754654.1	=	NC_081234.1	0
Chromosome 47	OV754655.1	=	NC_081235.1	0
Chromosome 48	OV754656.1	=	NC_081236.1	0
Chromosome 49	OV754657.1	=	NC_081237.1	0
Chromosome 50	OV754658.1	=	NC_081238.1	0
Chromosome 51	OV754659.1	=	NC_081239.1	0
Chromosome 52	OV754660.1	=	NC_081240.1	0
Chromosome 53	OV754661.1	=	NC_081241.1	0
Chromosome 54	OV754662.1	=	NC_081242.1	0
Chromosome 55	OV754663.1	=	NC_081243.1	0
Chromosome 56	OV754664.1	=	NC_081244.1	0
Chromosome 57	OV754665.1	=	NC_081245.1	0
Chromosome 58	OV754666.1	=	NC_081246.1	0
Chromosome 59	OV754667.1	=	NC_081247.1	0
Chromosome 60	OV754668.1	=	NC_081248.1	0
unplaced	n/a	n/a	n/a	1,670

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,899,794,300	1,730	1,899,708,000	42,723,358	433
Chromosome 1	120,284,971	1	120,283,371	120,284,971	8
Chromosome 2	117,442,607	1	117,438,407	117,442,607	21
Chromosome 3	107,861,399	1	107,858,599	107,861,399	14
Chromosome 4	107,546,964	1	107,543,764	107,546,964	16
Chromosome 5	89,158,644	1	89,156,444	89,158,644	11
Chromosome 6	82,796,169	1	82,794,169	82,796,169	10
Chromosome 7	70,030,798	1	70,027,298	70,030,798	19
Chromosome 8	64,488,835	1	64,487,235	64,488,835	8
Chromosome 9	60,415,325	1	60,414,125	60,415,325	6
Chromosome 10	52,790,667	1	52,788,467	52,790,667	11
Chromosome 11	44,288,098	1	44,286,898	44,288,098	6
Chromosome 12	42,723,358	1	42,721,758	42,723,358	8
Chromosome 13	40,031,957	1	40,030,757	40,031,957	6
Chromosome 14	39,844,807	1	39,843,007	39,844,807	9
Chromosome 15	36,320,016	1	36,318,616	36,320,016	7
Chromosome 16	35,407,901	1	35,406,501	35,407,901	7
Chromosome 17	33,919,744	1	33,918,544	33,919,744	6
Chromosome 18	33,708,750	1	33,707,950	33,708,750	4
Chromosome 19	32,936,793	1	32,935,993	32,936,793	4
Chromosome 20	32,492,586	1	32,491,386	32,492,586	6
Chromosome 21	32,121,766	1	32,119,166	32,121,766	13
Chromosome 22	31,466,284	1	31,465,484	31,466,284	4
Chromosome 23	30,298,233	1	30,297,033	30,298,233	6
Chromosome 24	30,280,797	1	30,279,997	30,280,797	4
Chromosome 25	29,163,661	1	29,163,061	29,163,661	3
Chromosome 26	27,247,100	1	27,245,900	27,247,100	6
Chromosome 27	27,160,281	1	27,158,881	27,160,281	7
Chromosome 28	26,601,340	1	26,599,940	26,601,340	7
Chromosome 29	23,150,024	1	23,149,024	23,150,024	5
Chromosome 30	15,950,775	1	15,948,375	15,950,775	12
Chromosome 31	15,640,301	1	15,639,901	15,640,301	2
Chromosome 32	14,920,740	1	14,919,940	14,920,740	4
Chromosome 33	13,866,786	1	13,865,986	13,866,786	4
Chromosome 34	13,071,461	1	13,070,061	13,071,461	7
Chromosome 35	12,404,596	1	12,402,996	12,404,596	8
Chromosome 36	11,679,904	1	11,678,504	11,679,904	7
Chromosome 37	11,202,971	1	11,200,971	11,202,971	10
Chromosome 38	11,185,070	1	11,184,070	11,185,070	5
Chromosome 39	11,158,315	1	11,156,715	11,158,315	8
Chromosome 40	11,068,500	1	11,067,100	11,068,500	7
Chromosome 41	11,060,557	1	11,057,957	11,060,557	13
Chromosome 42	10,493,859	1	10,492,459	10,493,859	7
Chromosome 43	10,244,506	1	10,243,506	10,244,506	5
Chromosome 44	10,225,657	1	10,224,457	10,225,657	6
Chromosome 45	10,204,494	1	10,202,494	10,204,494	10
Chromosome 46	9,981,101	1	9,980,501	9,981,101	3
Chromosome 47	9,613,114	1	9,612,714	9,613,114	2
Chromosome 48	9,602,254	1	9,601,254	9,602,254	5
Chromosome 49	9,010,004	1	9,008,604	9,010,004	7
Chromosome 50	8,955,912	1	8,953,912	8,955,912	10
Chromosome 51	8,912,718	1	8,912,318	8,912,718	2
Chromosome 52	8,643,010	1	8,642,610	8,643,010	2
Chromosome 53	8,531,648	1	8,530,848	8,531,648	4
Chromosome 54	8,415,289	1	8,413,689	8,415,289	8
Chromosome 55	7,779,024	1	7,778,024	7,779,024	5
Chromosome 56	6,999,034	1	6,997,434	6,999,034	8
Chromosome 57	5,172,572	1	5,171,772	5,172,572	4
Chromosome 58	4,871,811	1	4,871,411	4,871,811	2
Chromosome 59	4,652,156	1	4,651,756	4,652,156	2
Chromosome 60	4,335,207	1	4,335,007	4,335,207	1
unplaced	87,961,079	1,670	87,958,879	69,780	11

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fAciRut3.2 maternal haplotype

See Genome Information for Acipenser ruthenus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear