fParRan2.1

This assembly has been replaced. See current version

Organism name:: Parambassis ranga (Indian glassy fish)
BioSample:: SAMEA4675621
BioProject:: PRJEB30257
Submitter:: SC
Date:: 2019/02/06
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_900634625.1 (replaced)
RefSeq assembly accession:: GCF_900634625.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CAAAFN01
Genome coverage:: 101x

IDs: 2275211 [UID] 8516518 [GenBank] 8739508 [RefSeq]

See Genome Information for Parambassis ranga

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900634625.2	n/a	n/a	fParRan2.2	Chromosome	Latest GenBank
GCA_900634625.1	=	GCF_900634625.1	fParRan2.1	Chromosome	Latest RefSeq, Replaced GenBank

Comment

Global statistics

Total sequence length	551,012,959
Total ungapped length	540,451,419
Gaps between scaffolds	0
Number of scaffolds	156
Scaffold N50	22,993,012
Scaffold L50	10
Number of contigs	1,677
Contig N50	5,080,925
Contig L50	31
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	156

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR131960.1	=	NC_041022.1	0
Chromosome 2	LR131970.1	=	NC_041023.1	0
Chromosome 3	LR131975.1	=	NC_041024.1	0
Chromosome 4	LR131976.1	=	NC_041025.1	0
Chromosome 5	LR131977.1	=	NC_041026.1	0
Chromosome 6	LR131978.1	=	NC_041027.1	0
Chromosome 7	LR131979.1	=	NC_041028.1	0
Chromosome 8	LR131980.1	=	NC_041029.1	0
Chromosome 9	LR131981.1	=	NC_041030.1	0
Chromosome 10	LR131961.1	=	NC_041031.1	0
Chromosome 12	LR131962.1	=	NC_041032.1	0
Chromosome 13	LR131963.1	=	NC_041033.1	0
Chromosome 14	LR131964.1	=	NC_041034.1	0
Chromosome 15	LR131965.1	=	NC_041035.1	0
Chromosome 16	LR131966.1	=	NC_041036.1	0
Chromosome 17	LR131967.1	=	NC_041037.1	0
Chromosome 18	LR131968.1	=	NC_041038.1	0
Chromosome 19	LR131969.1	=	NC_041039.1	0
Chromosome 20	LR131971.1	=	NC_041040.1	0
Chromosome 21	LR131972.1	=	NC_041041.1	0
Chromosome 22	LR131973.1	=	NC_041042.1	0
Chromosome 24	LR131974.1	=	NC_041043.1	0
unplaced	n/a	n/a	n/a	134

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	551,012,959	156	540,451,419	22,993,012	1,521
Chromosome 1	26,048,542	1	26,033,271	26,048,542	13
Chromosome 2	46,703,924	1	45,909,045	46,703,924	77
Chromosome 3	26,339,914	1	26,261,513	26,339,914	24
Chromosome 4	25,197,870	1	24,933,484	25,197,870	22
Chromosome 5	32,179,582	1	30,197,393	32,179,582	191
Chromosome 6	16,008,367	1	15,653,455	16,008,367	17
Chromosome 7	22,877,807	1	22,819,156	22,877,807	21
Chromosome 8	18,866,916	1	18,736,302	18,866,916	22
Chromosome 9	23,963,493	1	23,891,448	23,963,493	27
Chromosome 10	24,485,510	1	24,484,171	24,485,510	10
Chromosome 12	17,157,085	1	17,106,762	17,157,085	21
Chromosome 13	24,575,694	1	24,349,022	24,575,694	25
Chromosome 14	21,894,654	1	21,493,669	21,894,654	84
Chromosome 15	22,291,100	1	22,289,648	22,291,100	13
Chromosome 16	22,465,611	1	22,422,830	22,465,611	16
Chromosome 17	22,993,012	1	22,235,057	22,993,012	133
Chromosome 18	13,600,723	1	13,538,652	13,600,723	16
Chromosome 19	24,703,432	1	24,523,601	24,703,432	9
Chromosome 20	19,831,688	1	19,619,323	19,831,688	52
Chromosome 21	22,777,957	1	22,777,544	22,777,957	5
Chromosome 22	20,675,483	1	20,522,444	20,675,483	24
Chromosome 24	18,018,294	1	17,964,201	18,018,294	9
unplaced	37,356,301	134	32,689,428	2,741,055	690

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

fParRan2.1

See Genome Information for Parambassis ranga

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics