U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



mCamDro1.pat

Organism name:
Camelus dromedarius (Arabian camel)
Isolate:
mCamDro1
Sex:
male
BioSample:
SAMN39296380
BioProject:
PRJNA1064426
Submitter:
Vertebrate Genomes Project
Date:
2024/01/31
Assembly type:
haploid (paternal haplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_036321535.1 (latest)
RefSeq assembly accession:
GCF_036321535.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAZARU01
Assembly method:
Hifiasm + Trio-binning v. 0.16.1 + galaxy4; yahs v. 1.2a.2
Expected final version:
no
Genome coverage:
39.4x
Sequencing technology:
PacBio Sequel II HiFi; Dovetail OmniC
Linked assembly:
GCA_036321565.1 (maternal haplotype of diploid)

IDs: 21208141 [UID] 53370398 [GenBank] 56118278 [RefSeq]

See Genome Information for Camelus dromedarius

Pathogen Detection Resources

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,306,603,094
Total ungapped length2,306,564,094
Gaps between scaffolds0
Number of scaffolds171
Scaffold N5072,991,593
Scaffold L5012
Number of contigs366
Contig N5031,216,184
Contig L5022
Total number of chromosomes and plasmids38
Number of component sequences (WGS or clone)171

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_036321555.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM070310.1=NC_087436.10
Chromosome 2CM070311.1=NC_087437.10
Chromosome 3CM070312.1=NC_087438.10
Chromosome 4CM070313.1=NC_087439.10
Chromosome 5CM070314.1=NC_087440.10
Chromosome 6CM070315.1=NC_087441.10
Chromosome 7CM070316.1=NC_087442.10
Chromosome 8CM070317.1=NC_087443.10
Chromosome 9CM070318.1=NC_087444.10
Chromosome 10CM070319.1=NC_087445.10
Chromosome 11CM070320.1=NC_087446.10
Chromosome 12CM070321.1=NC_087447.10
Chromosome 13CM070322.1=NC_087448.10
Chromosome 14CM070323.1=NC_087449.10
Chromosome 15CM070324.1=NC_087450.10
Chromosome 16CM070325.1=NC_087451.10
Chromosome 17CM070326.1=NC_087452.10
Chromosome 18CM070327.1=NC_087453.10
Chromosome 19CM070328.1=NC_087454.10
Chromosome 20CM070329.1=NC_087455.10
Chromosome 21CM070330.1=NC_087456.10
Chromosome 22CM070331.1=NC_087457.10
Chromosome 23CM070332.1=NC_087458.10
Chromosome 24CM070333.1=NC_087459.10
Chromosome 25CM070334.1=NC_087460.10
Chromosome 26CM070335.1=NC_087461.10
Chromosome 27CM070336.1=NC_087462.10
Chromosome 28CM070337.1=NC_087463.10
Chromosome 29CM070338.1=NC_087464.10
Chromosome 30CM070339.1=NC_087465.10
Chromosome 31CM070340.1=NC_087466.10
Chromosome 32CM070341.1=NC_087467.10
Chromosome 33CM070342.1=NC_087468.10
Chromosome 34CM070343.1=NC_087469.10
Chromosome 35CM070344.1=NC_087470.10
Chromosome 36CM070345.1=NC_087471.10
Chromosome XCM070346.1=NC_087472.10
Chromosome YCM070347.1=NC_087473.10
unplacedn/an/an/a133

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,306,603,0941712,306,564,09472,991,5931950
Chromosome 1123,284,1731123,282,973123,284,17360
Chromosome 2122,687,1601122,683,960122,687,160160
Chromosome 3119,246,4411119,246,241119,246,44110
Chromosome 498,502,776198,502,37698,502,77620
Chromosome 594,573,195194,572,79594,573,19520
Chromosome 692,118,556192,117,75692,118,55640
Chromosome 784,829,738184,828,53884,829,73860
Chromosome 883,750,800183,747,20083,750,800180
Chromosome 980,509,706180,508,10680,509,70680
Chromosome 1079,033,285179,032,28579,033,28550
Chromosome 1172,991,593172,989,79372,991,59390
Chromosome 1272,861,929172,861,52972,861,92920
Chromosome 1371,112,136171,112,13671,112,13600
Chromosome 1470,542,807170,541,60770,542,80760
Chromosome 1563,783,249163,782,24963,783,24950
Chromosome 1658,371,452158,369,85258,371,45280
Chromosome 1748,750,941148,750,14148,750,94140
Chromosome 1848,009,087148,008,28748,009,08740
Chromosome 1943,212,224143,210,62443,212,22480
Chromosome 2039,824,982139,823,58239,824,98270
Chromosome 2138,199,110138,199,11038,199,11000
Chromosome 2235,822,281135,822,08135,822,28110
Chromosome 2334,636,378134,635,57834,636,37840
Chromosome 2433,143,640133,140,84033,143,640140
Chromosome 2530,969,388130,968,78830,969,38830
Chromosome 2629,172,120129,171,92029,172,12010
Chromosome 2729,098,663129,096,66329,098,663100
Chromosome 2827,882,052127,881,65227,882,05220
Chromosome 2927,730,125127,729,72527,730,12520
Chromosome 3025,406,815125,406,41525,406,81520
Chromosome 3125,162,721125,162,72125,162,72100
Chromosome 3223,856,919123,856,71923,856,91910
Chromosome 3320,372,985120,372,78520,372,98510
Chromosome 3420,143,187120,142,98720,143,18710
Chromosome 3517,117,917117,117,51717,117,91720
Chromosome 3614,444,928114,443,52814,444,92870
Chromosome X114,202,7441114,199,944114,202,744140
Chromosome Y20,577,031120,575,23120,577,03190
unplaced170,667,860133170,667,8602,673,54800