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Source database (GenBank or RefSeq) File type

AGI_CSIRO_Cbre_v1

Organism name:: Culicoides brevitarsis (flies)
Isolate:: CSIRO-B50_1
Sex:: female
BioSample:: SAMN39213272
BioProject:: PRJNA1059659
Submitter:: CSIRO Applied Genomics Initiative
Date:: 2024/01/31
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_036172545.2 (latest)
RefSeq assembly accession:: GCF_036172545.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAYKJV01
Assembly method:: Raven v. 1.5.3; Polca (Masurca) v. 4.0.9; Racon v. 1.4.21
Expected final version:: yes
Genome coverage:: 80.0x
Sequencing technology:: Oxford Nanopore PromethION; Illumina NovaSeq

IDs: 21210401 [UID] 53384668 [GenBank] 54934838 [RefSeq]

See Genome Information for Culicoides brevitarsis

Pathogen Detection Resources

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Comment

Global statistics

Total sequence length	129,509,707
Total ungapped length	129,502,307
Gaps between scaffolds	0
Number of scaffolds	150
Scaffold N50	42,964,815
Scaffold L50	2
Number of contigs	224
Contig N50	3,474,000
Contig L50	14
Total number of chromosomes and plasmids	4
Number of component sequences (WGS or clone)	150

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Assembly Information

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AGI_CSIRO_Cbre_v1 - Genome - Assembly - NCBI
AGI_CSIRO_Cbre_v1 - Genome - Assembly - NCBI

Assembly

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Assembly Definition
Assembly Statistics

Global assembly definition

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Click on the table row to see sequence details in the table to the right

Assembly Unit Name
Primary Assembly
non-nuclear

Assembly Unit: Primary Assembly (GCF_036172555.1)

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM070085.1	=	NC_087085.1	0
Chromosome 2	CM070086.1	=	NC_087086.1	0
Chromosome 3	CM070087.1	=	NC_087087.1	0
unplaced	n/a	n/a	n/a	146

Assembly statistics

Primary Assembly
non-nuclear

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	129,492,607	149	129,485,207	42,964,815	74	0
Chromosome 1	46,604,242	1	46,601,942	46,604,242	23	0
Chromosome 2	42,964,815	1	42,962,415	42,964,815	24	0
Chromosome 3	36,017,608	1	36,014,908	36,017,608	27	0
unplaced	3,905,942	146	3,905,942	32,311	0	0

Molecule	Total Length
Mitochondrion MT	17,100