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ASM3559412v1

Organism name:
Scylla paramamosain (green mud crab)
Isolate:
STU-SP2022
Sex:
male
BioSample:
SAMN39200060
BioProject:
PRJNA1059155
Submitter:
college of science
Date:
2024/01/12
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_035594125.1 (latest)
RefSeq assembly accession:
GCF_035594125.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAYKKS01
Assembly method:
NextDenovo v. v2.3.1
Expected final version:
yes
Genome coverage:
69.98x
Sequencing technology:
Oxford Nanopore PromethION; HiFi; Hi-C

IDs: 20841561 [UID] 52514818 [GenBank] 55231528 [RefSeq]

See Genome Information for Scylla paramamosain

Pathogen Detection Resources

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,210,776,245
Total ungapped length1,210,753,745
Gaps between scaffolds0
Number of scaffolds234
Scaffold N5023,607,973
Scaffold L5020
Number of contigs459
Contig N5011,448,802
Contig L5037
Total number of chromosomes and plasmids50
Number of component sequences (WGS or clone)234

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_035594175.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM069318.1=NC_087151.10
Chromosome 2CM069319.1=NC_087152.10
Chromosome 3CM069320.1=NC_087153.10
Chromosome 4CM069321.1=NC_087154.10
Chromosome 5CM069322.1=NC_087155.10
Chromosome 6CM069323.1=NC_087156.10
Chromosome 7CM069324.1=NC_087157.10
Chromosome 8CM069325.1=NC_087158.10
Chromosome 9CM069326.1=NC_087159.10
Chromosome 10CM069327.1=NC_087160.10
Chromosome 11CM069328.1=NC_087161.10
Chromosome 12CM069329.1=NC_087162.10
Chromosome 13CM069330.1=NC_087163.10
Chromosome 14CM069331.1=NC_087164.10
Chromosome 15CM069332.1=NC_087165.10
Chromosome 16CM069333.1=NC_087166.10
Chromosome 17CM069334.1=NC_087167.10
Chromosome 18CM069335.1=NC_087168.10
Chromosome 19CM069336.1=NC_087169.10
Chromosome 20CM069337.1=NC_087170.10
Chromosome 21CM069338.1=NC_087171.10
Chromosome 22CM069339.1=NC_087172.10
Chromosome 23CM069340.1=NC_087173.10
Chromosome 24CM069341.1=NC_087174.10
Chromosome 25CM069342.1=NC_087175.10
Chromosome 26CM069343.1=NC_087176.10
Chromosome 27CM069344.1=NC_087177.10
Chromosome 28CM069345.1=NC_087178.10
Chromosome 29CM069346.1=NC_087179.10
Chromosome 30CM069347.1=NC_087180.10
Chromosome 31CM069348.1=NC_087181.10
Chromosome 32CM069349.1=NC_087182.10
Chromosome 33CM069350.1=NC_087183.10
Chromosome 34CM069351.1=NC_087184.10
Chromosome 35CM069352.1=NC_087185.10
Chromosome 36CM069353.1=NC_087186.10
Chromosome 37CM069354.1=NC_087187.10
Chromosome 38CM069355.1=NC_087188.10
Chromosome 39CM069356.1=NC_087189.10
Chromosome 40CM069357.1=NC_087190.10
Chromosome 41CM069358.1=NC_087191.10
Chromosome 42CM069359.1=NC_087192.10
Chromosome 43CM069360.1=NC_087193.10
Chromosome 44CM069361.1=NC_087194.10
Chromosome 45CM069362.1=NC_087195.10
Chromosome 46CM069363.1=NC_087196.10
Chromosome 47CM069364.1=NC_087197.10
Chromosome 48CM069365.1=NC_087198.10
Chromosome 49CM069366.1=NC_087199.10
unplacedn/an/an/a184

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,210,760,4202331,210,737,92023,607,9732250
Chromosome 142,181,690142,180,69042,181,690100
Chromosome 241,757,776141,757,47641,757,77630
Chromosome 341,098,093141,097,69341,098,09340
Chromosome 439,126,372139,125,97239,126,37240
Chromosome 536,844,451136,843,85136,844,45160
Chromosome 636,080,315136,079,81536,080,31550
Chromosome 734,711,873134,710,47334,711,873140
Chromosome 831,211,005131,210,40531,211,00560
Chromosome 930,957,417130,957,41730,957,41700
Chromosome 1029,900,781129,900,58129,900,78120
Chromosome 1129,249,983129,249,18329,249,98380
Chromosome 1228,486,615128,486,21528,486,61540
Chromosome 1327,170,568127,170,36827,170,56820
Chromosome 1426,732,916126,732,71626,732,91620
Chromosome 1525,809,680125,808,88025,809,68080
Chromosome 1624,936,265124,936,06524,936,26520
Chromosome 1724,557,172124,556,07224,557,172110
Chromosome 1824,063,018124,062,81824,063,01820
Chromosome 1923,791,259123,790,95923,791,25930
Chromosome 2023,607,973123,607,77323,607,97320
Chromosome 2123,015,963123,015,76323,015,96320
Chromosome 2222,972,311122,972,01122,972,31130
Chromosome 2322,072,799122,072,39922,072,79940
Chromosome 2421,978,027121,977,72721,978,02730
Chromosome 2521,816,234121,816,13421,816,23410
Chromosome 2621,779,049121,778,84921,779,04920
Chromosome 2721,503,289121,502,88921,503,28940
Chromosome 2820,671,572120,671,17220,671,57240
Chromosome 2919,790,430119,789,73019,790,43070
Chromosome 3019,787,246119,786,94619,787,24630
Chromosome 3119,336,055119,335,25519,336,05580
Chromosome 3218,657,233118,656,93318,657,23330
Chromosome 3318,512,759118,512,55918,512,75920
Chromosome 3418,124,432118,123,83218,124,43260
Chromosome 3517,105,381117,105,28117,105,38110
Chromosome 3616,427,573116,426,97316,427,57360
Chromosome 3716,268,032116,267,93216,268,03210
Chromosome 3815,570,585115,569,68515,570,58590
Chromosome 3915,446,886115,446,18615,446,88670
Chromosome 4014,400,662114,400,16214,400,66250
Chromosome 4113,996,154113,995,85413,996,15430
Chromosome 4213,901,429113,901,12913,901,42930
Chromosome 4312,955,074112,954,77412,955,07430
Chromosome 4412,308,975112,308,47512,308,97550
Chromosome 4511,913,018111,912,61811,913,01840
Chromosome 4610,648,424110,648,22410,648,42420
Chromosome 479,316,85619,316,0569,316,85680
Chromosome 488,010,99718,009,2978,010,997170
Chromosome 495,675,81115,675,7115,675,81110
unplaced104,521,942184104,521,942905,73100
MoleculeTotal
Length
Mitochondrion MT15,825