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Source database (GenBank or RefSeq) File type

rCanAsp1.hap2

Organism name:

Candoia aspera (snakes)

Isolate:

rCanAsp1

Sex:

female

BioSample:

SAMN37159891

BioProject:

PRJNA1009782

Submitter:

Vertebrate Genomes Project

Date:

2024/01/18

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_035149785.1 (latest)

RefSeq assembly accession:

GCF_035149785.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAYKKZ01

Assembly method:

Hifiasm + Hi-C phasing v. 0.16.1 + galaxy3; yahs v. 1.2a.2 + galaxy0

Expected final version:

Genome coverage:

37.0x

Sequencing technology:

PacBio Sequel II HiFi; Arima Hi-C v2

IDs: 20952881 [UID] 52760808 [GenBank] 53840608 [RefSeq]

See Genome Information for Candoia aspera

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_035149785.1	≠	GCF_035149785.1	rCanAsp1.hap2	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,530,810,380
Total ungapped length	1,530,790,180
Gaps between scaffolds	0
Number of scaffolds	149
Scaffold N50	209,480,725
Scaffold L50	3
Number of contigs	250
Contig N50	55,640,180
Contig L50	9
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	149

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM068885.1	=	NC_086153.1	0
Chromosome 2	CM068886.1	=	NC_086154.1	0
Chromosome 3	CM068887.1	=	NC_086155.1	0
Chromosome 4	CM068888.1	=	NC_086156.1	0
Chromosome 5	CM068889.1	=	NC_086157.1	0
Chromosome 6	CM068890.1	=	NC_086158.1	0
Chromosome 7	CM068891.1	=	NC_086159.1	0
Chromosome 8	CM068892.1	=	NC_086160.1	0
Chromosome 9	CM068893.1	=	NC_086161.1	0
Chromosome 10	CM068894.1	=	NC_086162.1	0
Chromosome 11	CM068895.1	=	NC_086163.1	0
Chromosome 12	CM068896.1	=	NC_086164.1	0
Chromosome 13	CM068897.1	=	NC_086165.1	0
Chromosome 14	CM068898.1	=	NC_086166.1	0
Chromosome 15	CM068899.1	=	NC_086167.1	0
Chromosome 16	CM068900.1	=	NC_086168.1	0
Chromosome 17	CM068901.1	=	NC_086169.1	0
Chromosome 18	CM068902.1	=	NC_086170.1	0
unplaced	n/a	n/a	n/a	131

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,530,810,380	149	1,530,790,180	209,480,725	101
Chromosome 1	343,993,754	1	343,992,154	343,993,754	8
Chromosome 2	265,922,563	1	265,921,163	265,922,563	7
Chromosome 3	209,480,725	1	209,479,125	209,480,725	8
Chromosome 4	119,283,806	1	119,281,606	119,283,806	11
Chromosome 5	117,631,150	1	117,630,750	117,631,150	2
Chromosome 6	100,805,772	1	100,803,972	100,805,772	9
Chromosome 7	84,500,290	1	84,499,290	84,500,290	5
Chromosome 8	78,784,299	1	78,783,099	78,784,299	6
Chromosome 9	27,872,941	1	27,871,941	27,872,941	5
Chromosome 10	27,116,933	1	27,116,133	27,116,933	4
Chromosome 11	25,783,037	1	25,781,837	25,783,037	6
Chromosome 12	25,223,809	1	25,221,009	25,223,809	14
Chromosome 13	23,823,530	1	23,822,730	23,823,530	4
Chromosome 14	20,477,136	1	20,476,936	20,477,136	1
Chromosome 15	17,224,316	1	17,223,916	17,224,316	2
Chromosome 16	12,371,328	1	12,371,128	12,371,328	1
Chromosome 17	11,828,921	1	11,828,321	11,828,921	3
Chromosome 18	10,138,715	1	10,137,715	10,138,715	5
unplaced	8,547,355	131	8,547,355	77,147	0

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rCanAsp1.hap2

See Genome Information for Candoia aspera

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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