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Source database (GenBank or RefSeq) File type

IST_EnEncr_1.0

Organism name:

Engraulis encrasicolus (European anchovy)

Isolate:

BLACKSEA-1

Sex:

female

BioSample:

SAMN37732789

BioProject:

PRJNA1026044

Submitter:

Istanbul University

Date:

2023/12/28

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_034702125.1 (latest)

RefSeq assembly accession:

GCF_034702125.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAXBCX01

Assembly method:

Wtdbg2 v. 2.5

Expected final version:

yes

Genome coverage:

180.0x

Sequencing technology:

PacBio Sequel; Illumina HiSeq; DNBSEQ-G400

IDs: 20412731 [UID] 51605658 [GenBank] 53500128 [RefSeq]

See Genome Information for Engraulis encrasicolus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_034702125.1	≠	GCF_034702125.1	IST_EnEncr_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,435,200,347
Total ungapped length	1,434,985,039
Gaps between scaffolds	0
Number of scaffolds	1,922
Scaffold N50	56,351,229
Scaffold L50	13
Number of contigs	4,087
Contig N50	1,448,200
Contig L50	246
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	1,922

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM068253.1	=	NC_085857.1	0
Chromosome 2	CM068254.1	=	NC_085858.1	0
Chromosome 3	CM068255.1	=	NC_085859.1	0
Chromosome 4	CM068256.1	=	NC_085860.1	0
Chromosome 5	CM068257.1	=	NC_085861.1	0
Chromosome 6	CM068258.1	=	NC_085862.1	0
Chromosome 7	CM068259.1	=	NC_085863.1	0
Chromosome 8	CM068260.1	=	NC_085864.1	0
Chromosome 9	CM068261.1	=	NC_085865.1	0
Chromosome 10	CM068262.1	=	NC_085866.1	0
Chromosome 11	CM068263.1	=	NC_085867.1	0
Chromosome 12	CM068264.1	=	NC_085868.1	0
Chromosome 13	CM068265.1	=	NC_085869.1	0
Chromosome 14	CM068266.1	=	NC_085870.1	0
Chromosome 15	CM068267.1	=	NC_085871.1	0
Chromosome 16	CM068268.1	=	NC_085872.1	0
Chromosome 17	CM068269.1	=	NC_085873.1	0
Chromosome 18	CM068270.1	=	NC_085874.1	0
Chromosome 19	CM068271.1	=	NC_085875.1	0
Chromosome 20	CM068272.1	=	NC_085876.1	0
Chromosome 21	CM068273.1	=	NC_085877.1	0
Chromosome 22	CM068274.1	=	NC_085878.1	0
Chromosome 23	CM068275.1	=	NC_085879.1	0
Chromosome 24	CM068276.1	=	NC_085880.1	0
unplaced	n/a	n/a	n/a	1,897

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,435,183,673	1,921	1,434,968,365	56,351,229	2,165
Chromosome 1	60,269,354	1	60,258,306	60,269,354	111
Chromosome 2	59,677,088	1	59,671,338	59,677,088	58
Chromosome 3	59,223,568	1	59,209,061	59,223,568	146
Chromosome 4	58,387,832	1	58,379,473	58,387,832	84
Chromosome 5	58,125,113	1	58,119,144	58,125,113	60
Chromosome 6	57,946,542	1	57,939,091	57,946,542	75
Chromosome 7	57,464,489	1	57,457,312	57,464,489	72
Chromosome 8	57,116,610	1	57,110,039	57,116,610	66
Chromosome 9	57,067,550	1	57,059,934	57,067,550	77
Chromosome 10	57,050,747	1	57,044,488	57,050,747	63
Chromosome 11	56,889,436	1	56,881,514	56,889,436	80
Chromosome 12	56,824,834	1	56,814,894	56,824,834	100
Chromosome 13	56,351,229	1	56,343,273	56,351,229	80
Chromosome 14	55,592,847	1	55,587,577	55,592,847	53
Chromosome 15	55,401,277	1	55,390,333	55,401,277	110
Chromosome 16	55,458,920	1	55,453,035	55,458,920	59
Chromosome 17	54,845,904	1	54,834,981	54,845,904	110
Chromosome 18	53,823,525	1	53,814,559	53,823,525	90
Chromosome 19	52,871,491	1	52,866,314	52,871,491	52
Chromosome 20	52,616,046	1	52,607,288	52,616,046	88
Chromosome 21	52,123,816	1	52,112,476	52,123,816	114
Chromosome 22	52,058,191	1	52,053,314	52,058,191	49
Chromosome 23	51,632,193	1	51,626,819	51,632,193	54
Chromosome 24	49,203,898	1	49,197,528	49,203,898	64
unplaced	97,161,173	1,897	97,136,274	234,080	250

Assembly

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IST_EnEncr_1.0

See Genome Information for Engraulis encrasicolus

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear