RoL_Noph_v1.0

Organism name:: Nerophis ophidion (straightnose pipefish)
Isolate:: RoL-2023_Sa
Sex:: male
BioSample:: SAMN37953718
BioProject:: PRJNA851781
Submitter:: University of Idaho at Moscow
Date:: 2023/12/01
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_033978795.1 (latest)
RefSeq assembly accession:: GCF_033978795.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAWNBE01
Assembly method:: HiFiasm v. 0.16.1; Juicer v. 1.22.01; 3D-DNA v. 180922
Expected final version:: no
Genome coverage:: 80.0x
Sequencing technology:: PacBio Hi-Fi; Phase Genomics Hi-C

IDs: 19910161 [UID] 50513608 [GenBank] 51299908 [RefSeq]

See Genome Information for Nerophis ophidion

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_033978795.1	=	GCF_033978795.1	RoL_Noph_v1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,845,757,181
Total ungapped length	1,845,733,741
Gaps between scaffolds	0
Number of scaffolds	473
Scaffold N50	66,953,617
Scaffold L50	12
Number of contigs	1,645
Contig N50	4,791,538
Contig L50	94
Total number of chromosomes and plasmids	29
Number of component sequences (WGS or clone)	473

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG01	CM067138.1	=	NC_084611.1	0
Linkage Group LG02	CM067139.1	=	NC_084612.1	0
Linkage Group LG03	CM067140.1	=	NC_084613.1	0
Linkage Group LG04	CM067141.1	=	NC_084614.1	0
Linkage Group LG05	CM067142.1	=	NC_084615.1	0
Linkage Group LG06	CM067143.1	=	NC_084616.1	0
Linkage Group LG07	CM067144.1	=	NC_084617.1	0
Linkage Group LG08	CM067145.1	=	NC_084618.1	0
Linkage Group LG09	CM067146.1	=	NC_084619.1	0
Linkage Group LG10	CM067147.1	=	NC_084620.1	0
Linkage Group LG11	CM067148.1	=	NC_084621.1	0
Linkage Group LG12	CM067149.1	=	NC_084622.1	0
Linkage Group LG13	CM067150.1	=	NC_084623.1	0
Linkage Group LG14	CM067151.1	=	NC_084624.1	0
Linkage Group LG15	CM067152.1	=	NC_084625.1	0
Linkage Group LG16	CM067153.1	=	NC_084626.1	0
Linkage Group LG17	CM067154.1	=	NC_084627.1	0
Linkage Group LG18	CM067155.1	=	NC_084628.1	0
Linkage Group LG19	CM067156.1	=	NC_084629.1	0
Linkage Group LG20	CM067157.1	=	NC_084630.1	0
Linkage Group LG21	CM067158.1	=	NC_084631.1	0
Linkage Group LG22	CM067159.1	=	NC_084632.1	0
Linkage Group LG23	CM067160.1	=	NC_084633.1	0
Linkage Group LG24	CM067161.1	=	NC_084634.1	0
Linkage Group LG25	CM067162.1	=	NC_084635.1	0
Linkage Group LG26	CM067163.1	=	NC_084636.1	0
Linkage Group LG27	CM067164.1	=	NC_084637.1	0
Linkage Group LG28	CM067165.1	=	NC_084638.1	0
Linkage Group LG29	CM067166.1	=	NC_084639.1	0
unplaced	n/a	n/a	n/a	444

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,845,757,181	473	1,845,733,741	66,953,617	1,172
Linkage Group LG01	93,097,911	1	93,097,151	93,097,911	38
Linkage Group LG02	91,299,185	1	91,297,985	91,299,185	60
Linkage Group LG03	91,267,216	1	91,265,996	91,267,216	61
Linkage Group LG04	86,774,713	1	86,773,873	86,774,713	42
Linkage Group LG05	81,238,842	1	81,238,242	81,238,842	30
Linkage Group LG06	79,864,482	1	79,863,802	79,864,482	34
Linkage Group LG07	79,539,960	1	79,538,840	79,539,960	56
Linkage Group LG08	78,791,513	1	78,790,553	78,791,513	48
Linkage Group LG09	77,547,000	1	77,546,180	77,547,000	41
Linkage Group LG10	73,613,590	1	73,612,690	73,613,590	45
Linkage Group LG11	69,978,453	1	69,977,873	69,978,453	29
Linkage Group LG12	66,953,617	1	66,952,337	66,953,617	64
Linkage Group LG13	62,144,247	1	62,143,387	62,144,247	43
Linkage Group LG14	55,884,886	1	55,884,066	55,884,886	41
Linkage Group LG15	55,275,245	1	55,274,625	55,275,245	31
Linkage Group LG16	54,502,113	1	54,501,153	54,502,113	48
Linkage Group LG17	53,015,709	1	53,015,129	53,015,709	29
Linkage Group LG18	50,634,444	1	50,633,644	50,634,444	40
Linkage Group LG19	48,882,318	1	48,881,838	48,882,318	24
Linkage Group LG20	47,612,443	1	47,611,683	47,612,443	38
Linkage Group LG21	47,348,543	1	47,347,943	47,348,543	30
Linkage Group LG22	45,506,861	1	45,506,061	45,506,861	40
Linkage Group LG23	43,361,553	1	43,360,813	43,361,553	37
Linkage Group LG24	42,751,185	1	42,750,125	42,751,185	53
Linkage Group LG25	41,220,814	1	41,220,114	41,220,814	35
Linkage Group LG26	39,676,356	1	39,675,816	39,676,356	27
Linkage Group LG27	37,013,214	1	37,012,614	37,013,214	30
Linkage Group LG28	35,541,461	1	35,540,681	35,541,461	39
Linkage Group LG29	31,224,652	1	31,223,872	31,224,652	39
unplaced	84,194,655	444	84,194,655	347,396	0

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RoL_Noph_v1.0

See Genome Information for Nerophis ophidion

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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