RoL_Nlum_1.0

Organism name:: Nerophis lumbriciformis (worm pipefish)
Infraspecific name:: Strain: RoL_2023-P1
Sex:: male
BioSample:: SAMN37908378
BioProject:: PRJNA851781
Submitter:: University of Idaho at Moscow
Date:: 2023/11/29
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_033978685.1 (latest)
RefSeq assembly accession:: GCF_033978685.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAWMBG01
Assembly method:: HiFiasm v. 0.16.1; Juicer v. 1.22.01; 3D-DNA v. 180922
Expected final version:: no
Genome coverage:: 80.0x
Sequencing technology:: Pacific Biosciences Hi-Fi; Phase Genomics Hi-C

IDs: 19892881 [UID] 50476858 [GenBank] 51267678 [RefSeq]

See Genome Information for Nerophis lumbriciformis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_033978685.1	=	GCF_033978685.1	RoL_Nlum_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	3,157,240,560
Total ungapped length	3,157,237,650
Gaps between scaffolds	0
Number of scaffolds	630
Scaffold N50	48,226,413
Scaffold L50	26
Number of contigs	776
Contig N50	40,397,774
Contig L50	31
Total number of chromosomes and plasmids	39
Number of component sequences (WGS or clone)	630

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG01	CM067018.1	=	NC_084548.1	0
Linkage Group LG02	CM067019.1	=	NC_084549.1	0
Linkage Group LG03	CM067020.1	=	NC_084550.1	0
Linkage Group LG04	CM067021.1	=	NC_084551.1	0
Linkage Group LG05	CM067022.1	=	NC_084552.1	0
Linkage Group LG06	CM067023.1	=	NC_084553.1	0
Linkage Group LG07	CM067024.1	=	NC_084554.1	0
Linkage Group LG08	CM067025.1	=	NC_084555.1	0
Linkage Group LG09	CM067026.1	=	NC_084556.1	0
Linkage Group LG10	CM067027.1	=	NC_084557.1	0
Linkage Group LG11	CM067028.1	=	NC_084558.1	0
Linkage Group LG12	CM067029.1	=	NC_084559.1	0
Linkage Group LG13	CM067030.1	=	NC_084560.1	0
Linkage Group LG14	CM067031.1	=	NC_084561.1	0
Linkage Group LG15	CM067032.1	=	NC_084562.1	0
Linkage Group LG16	CM067033.1	=	NC_084563.1	0
Linkage Group LG17	CM067034.1	=	NC_084564.1	0
Linkage Group LG18	CM067035.1	=	NC_084565.1	0
Linkage Group LG19	CM067036.1	=	NC_084566.1	0
Linkage Group LG20	CM067037.1	=	NC_084567.1	0
Linkage Group LG21	CM067038.1	=	NC_084568.1	0
Linkage Group LG22	CM067039.1	=	NC_084569.1	0
Linkage Group LG23	CM067040.1	=	NC_084570.1	0
Linkage Group LG24	CM067041.1	=	NC_084571.1	0
Linkage Group LG25	CM067042.1	=	NC_084572.1	0
Linkage Group LG26	CM067043.1	=	NC_084573.1	0
Linkage Group LG27	CM067044.1	=	NC_084574.1	0
Linkage Group LG28	CM067045.1	=	NC_084575.1	0
Linkage Group LG29	CM067046.1	=	NC_084576.1	0
Linkage Group LG30	CM067047.1	=	NC_084577.1	0
Linkage Group LG31	CM067048.1	=	NC_084578.1	0
Linkage Group LG32	CM067049.1	=	NC_084579.1	0
Linkage Group LG33	CM067050.1	=	NC_084580.1	0
Linkage Group LG34	CM067051.1	=	NC_084581.1	0
Linkage Group LG35	CM067052.1	=	NC_084582.1	0
Linkage Group LG36	CM067053.1	=	NC_084583.1	0
Linkage Group LG37	CM067054.1	=	NC_084584.1	0
Linkage Group LG38	CM067055.1	=	NC_084585.1	0
Linkage Group LG39	CM067056.1	=	NC_084586.1	0
unplaced	n/a	n/a	n/a	591

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,157,240,560	630	3,157,237,650	48,226,413	146
Linkage Group LG01	79,211,643	1	79,211,443	79,211,643	10
Linkage Group LG02	78,512,768	1	78,512,768	78,512,768	0
Linkage Group LG03	75,998,145	1	75,997,905	75,998,145	12
Linkage Group LG04	68,749,973	1	68,749,973	68,749,973	0
Linkage Group LG05	68,484,319	1	68,484,159	68,484,319	8
Linkage Group LG06	67,729,222	1	67,729,202	67,729,222	1
Linkage Group LG07	61,878,242	1	61,878,022	61,878,242	11
Linkage Group LG08	59,208,858	1	59,208,838	59,208,858	1
Linkage Group LG09	58,732,411	1	58,732,271	58,732,411	7
Linkage Group LG10	57,063,175	1	57,063,175	57,063,175	0
Linkage Group LG11	55,880,502	1	55,880,462	55,880,502	2
Linkage Group LG12	55,802,738	1	55,802,678	55,802,738	3
Linkage Group LG13	51,474,770	1	51,474,610	51,474,770	8
Linkage Group LG14	47,887,727	1	47,887,627	47,887,727	5
Linkage Group LG15	47,289,630	1	47,289,570	47,289,630	3
Linkage Group LG16	47,273,037	1	47,272,917	47,273,037	6
Linkage Group LG17	46,179,202	1	46,179,162	46,179,202	2
Linkage Group LG18	45,890,352	1	45,890,352	45,890,352	0
Linkage Group LG19	45,623,431	1	45,623,251	45,623,431	9
Linkage Group LG20	45,113,078	1	45,113,078	45,113,078	0
Linkage Group LG21	44,423,510	1	44,423,430	44,423,510	4
Linkage Group LG22	44,403,569	1	44,403,569	44,403,569	0
Linkage Group LG23	43,786,996	1	43,786,626	43,786,996	19
Linkage Group LG24	42,594,420	1	42,594,420	42,594,420	0
Linkage Group LG25	40,768,765	1	40,768,725	40,768,765	2
Linkage Group LG26	40,619,702	1	40,619,702	40,619,702	0
Linkage Group LG27	39,066,958	1	39,066,958	39,066,958	0
Linkage Group LG28	38,243,631	1	38,243,491	38,243,631	7
Linkage Group LG29	35,230,287	1	35,230,247	35,230,287	2
Linkage Group LG30	33,532,737	1	33,532,737	33,532,737	0
Linkage Group LG31	31,133,274	1	31,133,274	31,133,274	0
Linkage Group LG32	29,567,191	1	29,567,151	29,567,191	2
Linkage Group LG33	28,639,696	1	28,639,576	28,639,696	6
Linkage Group LG34	27,922,432	1	27,922,392	27,922,432	2
Linkage Group LG35	26,402,728	1	26,402,708	26,402,728	1
Linkage Group LG36	26,203,593	1	26,203,593	26,203,593	0
Linkage Group LG37	25,399,803	1	25,399,803	25,399,803	0
Linkage Group LG38	25,198,545	1	25,198,485	25,198,545	3
Linkage Group LG39	23,972,136	1	23,972,136	23,972,136	0
unplaced	1,346,147,364	591	1,346,147,164	55,402,167	10

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RoL_Nlum_1.0

See Genome Information for Nerophis lumbriciformis

Pathogen Detection Resources

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