U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



CSIRO_AGI_Scuc_v1

Organism name:
Saccostrea cucullata (small rock oyster)
Isolate:
Sc308-1
BioSample:
SAMN36775350
BioProject:
PRJNA1000703
Submitter:
CSIRO Applied Genomics Initiative
Date:
2023/09/27
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_032062105.1 (latest)
RefSeq assembly accession:
GCF_032062105.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAVVLV01
Assembly method:
wtdbg2 v. 2.5
Expected final version:
yes
Genome coverage:
51.0x
Sequencing technology:
Oxford Nanopore PromethION; Illumina HiSeq

IDs: 18856381 [UID] 48101998 [GenBank] 53368928 [RefSeq]

See Genome Information for Saccostrea cucullata

History (Show revision history)

Comment

Global statistics

Total sequence length1,170,599,691
Total ungapped length1,170,599,691
Number of contigs23,869
Contig N50115,002
Contig L502,063
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)23,869

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,170,583,29523,8681,170,583,295115,00200
MoleculeTotal
Length
Mitochondrion MT16,396