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Source database (GenBank or RefSeq) File type

bGavSte3.hap2

Organism name:

Gavia stellata (red-throated loon)

Isolate:

bGavSte3

Sex:

male

BioSample:

SAMN37096312

BioProject:

PRJNA1008847

Submitter:

Vertebrate Genomes Project

Date:

2023/08/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030936135.1 (latest)

RefSeq assembly accession:

GCF_030936135.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAVGIZ01

Assembly method:

Hifiasm + Hi-C phasing v. 0.18.8 + galaxy1; yahs v. 1.2a.2 + galaxy0

Expected final version:

Genome coverage:

35.0x

Sequencing technology:

PacBio Sequel II HiFi; Arima Hi-C v2

IDs: 18303431 [UID] 46739128 [GenBank] 48001168 [RefSeq]

See Genome Information for Gavia stellata

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030936135.1	≠	GCF_030936135.1	bGavSte3.hap2	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,321,270,170
Total ungapped length	1,321,220,370
Gaps between scaffolds	0
Number of scaffolds	1,185
Scaffold N50	50,637,386
Scaffold L50	8
Number of contigs	1,434
Contig N50	13,765,203
Contig L50	31
Total number of chromosomes and plasmids	44
Number of component sequences (WGS or clone)	1,185

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM061689.1	=	NC_082594.1	0
Chromosome 2	CM061690.1	=	NC_082595.1	0
Chromosome 3	CM061691.1	=	NC_082596.1	0
Chromosome 4	CM061692.1	=	NC_082597.1	0
Chromosome 5	CM061693.1	=	NC_082598.1	0
Chromosome 6	CM061694.1	=	NC_082599.1	0
Chromosome 7	CM061695.1	=	NC_082600.1	0
Chromosome 8	CM061696.1	=	NC_082601.1	0
Chromosome 9	CM061697.1	=	NC_082602.1	0
Chromosome 10	CM061698.1	=	NC_082603.1	0
Chromosome 11	CM061699.1	=	NC_082604.1	0
Chromosome 12	CM061700.1	=	NC_082605.1	0
Chromosome 13	CM061701.1	=	NC_082606.1	0
Chromosome 14	CM061702.1	=	NC_082607.1	0
Chromosome 15	CM061703.1	=	NC_082608.1	0
Chromosome 16	CM061704.1	=	NC_082609.1	0
Chromosome 17	CM061705.1	=	NC_082610.1	0
Chromosome 18	CM061706.1	=	NC_082611.1	0
Chromosome 19	CM061707.1	=	NC_082612.1	0
Chromosome 20	CM061708.1	=	NC_082613.1	0
Chromosome 21	CM061709.1	=	NC_082614.1	0
Chromosome 22	CM061710.1	=	NC_082615.1	0
Chromosome 23	CM061711.1	=	NC_082616.1	0
Chromosome 24	CM061712.1	=	NC_082617.1	0
Chromosome 25	CM061713.1	=	NC_082618.1	0
Chromosome 26	CM061714.1	=	NC_082619.1	0
Chromosome 27	CM061715.1	=	NC_082620.1	0
Chromosome 28	CM061716.1	=	NC_082621.1	0
Chromosome 29	CM061717.1	=	NC_082622.1	0
Chromosome 30	CM061718.1	=	NC_082623.1	0
Chromosome 31	CM061719.1	=	NC_082624.1	0
Chromosome 32	CM061720.1	=	NC_082625.1	0
Chromosome 33	CM061721.1	=	NC_082626.1	0
Chromosome 34	CM061722.1	=	NC_082627.1	0
Chromosome 35	CM061723.1	=	NC_082628.1	0
Chromosome 36	CM061724.1	=	NC_082629.1	0
Chromosome 37	CM061725.1	=	NC_082630.1	0
Chromosome 38	CM061726.1	=	NC_082631.1	0
Chromosome 39	CM061727.1	=	NC_082632.1	0
Chromosome 40	CM061728.1	=	NC_082633.1	0
Chromosome 41	CM061729.1	=	NC_082634.1	0
Chromosome 42	CM061730.1	=	NC_082635.1	0
Chromosome 43	CM061731.1	=	NC_082636.1	0
Chromosome Z	CM061732.1	=	NC_082637.1	0
unplaced	n/a	n/a	n/a	1,141

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,321,270,170	1,185	1,321,220,370	50,637,386	249
Chromosome 1	133,328,454	1	133,324,454	133,328,454	20
Chromosome 2	113,717,467	1	113,714,467	113,717,467	15
Chromosome 3	105,015,243	1	105,013,243	105,015,243	10
Chromosome 4	85,811,070	1	85,808,270	85,811,070	14
Chromosome 5	65,280,277	1	65,279,277	65,280,277	5
Chromosome 6	63,245,685	1	63,244,085	63,245,685	8
Chromosome 7	50,637,386	1	50,635,786	50,637,386	8
Chromosome 8	45,623,099	1	45,622,299	45,623,099	4
Chromosome 9	41,840,908	1	41,839,908	41,840,908	5
Chromosome 10	37,093,707	1	37,092,507	37,093,707	6
Chromosome 11	31,089,920	1	31,089,520	31,089,920	2
Chromosome 12	26,083,448	1	26,083,048	26,083,448	2
Chromosome 13	25,455,066	1	25,453,666	25,455,066	7
Chromosome 14	25,044,265	1	25,043,265	25,044,265	5
Chromosome 15	23,977,934	1	23,976,534	23,977,934	7
Chromosome 16	22,223,488	1	22,223,488	22,223,488	0
Chromosome 17	22,392,527	1	22,391,527	22,392,527	5
Chromosome 18	20,682,601	1	20,682,401	20,682,601	1
Chromosome 19	20,772,559	1	20,771,759	20,772,559	4
Chromosome 20	18,128,590	1	18,128,190	18,128,590	2
Chromosome 21	17,219,050	1	17,218,650	17,219,050	2
Chromosome 22	14,766,197	1	14,765,797	14,766,197	2
Chromosome 23	13,528,853	1	13,528,453	13,528,853	2
Chromosome 24	13,944,874	1	13,944,274	13,944,874	3
Chromosome 25	13,515,136	1	13,514,936	13,515,136	1
Chromosome 26	9,977,565	1	9,977,165	9,977,565	2
Chromosome 27	10,043,061	1	10,042,061	10,043,061	5
Chromosome 28	9,545,534	1	9,543,534	9,545,534	10
Chromosome 29	8,786,611	1	8,786,011	8,786,611	3
Chromosome 30	7,906,315	1	7,905,715	7,906,315	3
Chromosome 31	6,704,313	1	6,703,113	6,704,313	6
Chromosome 32	6,584,806	1	6,583,406	6,584,806	7
Chromosome 33	5,086,106	1	5,084,306	5,086,106	9
Chromosome 34	3,489,915	1	3,489,715	3,489,915	1
Chromosome 35	1,782,458	1	1,781,658	1,782,458	4
Chromosome 36	2,283,385	1	2,281,585	2,283,385	9
Chromosome 37	1,750,395	1	1,749,795	1,750,395	3
Chromosome 38	1,068,729	1	1,067,129	1,068,729	8
Chromosome 39	613,457	1	612,657	613,457	4
Chromosome 40	344,389	1	344,389	344,389	0
Chromosome 41	455,725	1	454,925	455,725	4
Chromosome 42	382,337	1	381,937	382,337	2
Chromosome 43	142,769	1	142,169	142,769	3
Chromosome Z	89,492,694	1	89,489,294	89,492,694	17
unplaced	104,411,802	1,141	104,410,002	91,519	9

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bGavSte3.hap2

See Genome Information for Gavia stellata

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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