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Source database (GenBank or RefSeq) File type

rAllMis1

Organism name:

Alligator mississippiensis (American alligator)

Isolate:

rAllMis1

Sex:

female

BioSample:

SAMN37045233

BioProject:

PRJNA1006701

Submitter:

Vertebrate Genomes Project

Date:

2023/08/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030867095.1 (latest)

RefSeq assembly accession:

GCF_030867095.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAVFJH01

Assembly method:

Hifiasm + Hi-C phasing v. 0.16.1 + galaxy4; Bionano Solve v. 3.7; yahs v. 1.2a.2 + galaxy0

Expected final version:

Genome coverage:

35.86x

Sequencing technology:

PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2

IDs: 18211701 [UID] 46538328 [GenBank] 47171088 [RefSeq]

See Genome Information for Alligator mississippiensis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030867095.1	≠	GCF_030867095.1	rAllMis1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,346,795,873
Total ungapped length	2,330,342,026
Gaps between scaffolds	0
Number of scaffolds	195
Scaffold N50	255,078,640
Scaffold L50	4
Number of contigs	356
Contig N50	38,556,409
Contig L50	18
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	195

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM061332.1	=	NC_081824.1	0
Chromosome 2	CM061333.1	=	NC_081825.1	0
Chromosome 3	CM061334.1	=	NC_081826.1	0
Chromosome 4	CM061335.1	=	NC_081827.1	0
Chromosome 5	CM061336.1	=	NC_081828.1	0
Chromosome 6	CM061337.1	=	NC_081829.1	0
Chromosome 7	CM061338.1	=	NC_081830.1	0
Chromosome 8	CM061339.1	=	NC_081831.1	0
Chromosome 9	CM061340.1	=	NC_081832.1	0
Chromosome 10	CM061341.1	=	NC_081833.1	0
Chromosome 11	CM061342.1	=	NC_081834.1	0
Chromosome 12	CM061343.1	=	NC_081835.1	0
Chromosome 13	CM061344.1	=	NC_081836.1	0
Chromosome 14	CM061345.1	=	NC_081837.1	0
Chromosome 15	CM061346.1	=	NC_081838.1	0
Chromosome 16	CM061347.1	=	NC_081839.1	0
unplaced	n/a	n/a	n/a	178

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,346,779,227	194	2,330,325,380	255,078,640	161
Chromosome 1	486,595,084	1	486,337,509	486,595,084	26
Chromosome 2	307,635,815	1	307,445,548	307,635,815	12
Chromosome 3	303,743,212	1	302,560,527	303,743,212	17
Chromosome 4	255,078,640	1	243,353,132	255,078,640	31
Chromosome 5	220,919,336	1	220,768,976	220,919,336	8
Chromosome 6	101,387,383	1	101,221,613	101,387,383	9
Chromosome 7	90,017,264	1	89,937,074	90,017,264	3
Chromosome 8	83,641,976	1	83,633,199	83,641,976	4
Chromosome 9	79,974,352	1	79,948,497	79,974,352	7
Chromosome 10	77,866,373	1	77,865,973	77,866,373	2
Chromosome 11	75,951,454	1	75,951,389	75,951,454	5
Chromosome 12	67,968,646	1	67,503,025	67,968,646	2
Chromosome 13	59,844,109	1	59,835,985	59,844,109	4
Chromosome 14	46,093,036	1	46,038,198	46,093,036	7
Chromosome 15	38,737,084	1	37,826,971	38,737,084	13
Chromosome 16	35,665,775	1	34,896,672	35,665,775	3
unplaced	15,659,688	178	15,201,092	100,346	8

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rAllMis1

See Genome Information for Alligator mississippiensis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear