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Source database (GenBank or RefSeq) File type

Sugi_1.0

Organism name:

Cryptomeria japonica (Japanese cedar)

BioSample:

SAMD00508672

BioProject:

PRJDB13806

Submitter:

Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute

Date:

2023/03/31

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030272615.1 (latest)

RefSeq assembly accession:

GCF_030272615.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

BSEH01

Assembly method:

HiFiasm v. 0.15.5-r350

Genome coverage:

24x

Sequencing technology:

PacBio Sequel II; HiSeq X Ten

IDs: 18131851 [UID] 46363478 [GenBank] 46553398 [RefSeq]

See Genome Information for Cryptomeria japonica

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030272615.1	≠	GCF_030272615.1	Sugi_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	9,046,664,120
Total ungapped length	9,045,151,827
Gaps between scaffolds	0
Number of scaffolds	2,699
Scaffold N50	754,841,075
Scaffold L50	6
Number of contigs	5,730
Contig N50	8,537,601
Contig L50	300
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	2,699

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	BSEH01000001.1	=	NC_081405.1	0
Chromosome 2	BSEH01000002.1	=	NC_081406.1	0
Chromosome 3	BSEH01000003.1	=	NC_081407.1	0
Chromosome 4	BSEH01000004.1	=	NC_081408.1	0
Chromosome 5	BSEH01000005.1	=	NC_081409.1	0
Chromosome 6	BSEH01000006.1	=	NC_081410.1	0
Chromosome 7	BSEH01000007.1	=	NC_081411.1	0
Chromosome 8	BSEH01000008.1	=	NC_081412.1	0
Chromosome 9	BSEH01000009.1	=	NC_081413.1	0
Chromosome 10	BSEH01000010.1	=	NC_081414.1	0
Chromosome 11	BSEH01000011.1	=	NC_081415.1	0
unplaced	n/a	n/a	n/a	2,687

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	9,046,532,310	2,698	9,045,020,017	754,841,075	3,031
Chromosome 1	718,876,227	1	718,783,727	718,876,227	185
Chromosome 2	680,319,432	1	680,217,389	680,319,432	205
Chromosome 3	1,007,622,168	1	1,007,446,168	1,007,622,168	352
Chromosome 4	781,262,672	1	781,135,588	781,262,672	256
Chromosome 5	933,584,362	1	933,436,362	933,584,362	296
Chromosome 6	683,545,021	1	683,485,521	683,545,021	119
Chromosome 7	862,687,481	1	862,475,440	862,687,481	425
Chromosome 8	746,363,822	1	746,254,780	746,363,822	219
Chromosome 9	754,841,075	1	754,710,075	754,841,075	262
Chromosome 10	924,125,822	1	924,000,784	924,125,822	251
Chromosome 11	736,731,119	1	736,553,074	736,731,119	357
unplaced	216,573,109	2,687	216,521,109	316,971	104

Assembly

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Sugi_1.0

See Genome Information for Cryptomeria japonica

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear