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ASM3026506v1

Organism name:
Corythoichthys intestinalis (scribbled pipefish)
Isolate:
RoL2023-P3
Sex:
male
BioSample:
SAMN32966972
BioProject:
PRJNA851781
Submitter:
University of Idaho at Moscow
Date:
2023/06/20
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_030265065.1 (latest)
RefSeq assembly accession:
GCF_030265065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQPVN01
Assembly method:
Hifiasm v. 0.16.1; Juicer v. 1.22.01; 3D-DNA v. 180922
Expected final version:
no
Genome coverage:
80.0x
Sequencing technology:
Pacbio Hi-Fi

IDs: 16969701 [UID] 43578058 [GenBank] 44144858 [RefSeq]

See Genome Information for Corythoichthys intestinalis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,326,793,283
Total ungapped length1,326,793,103
Gaps between scaffolds0
Number of scaffolds109
Scaffold N5059,287,289
Scaffold L5010
Number of contigs118
Contig N5056,274,649
Contig L5011
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)109

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030265275.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM059149.1=NC_080395.10
Chromosome 2CM059150.1=NC_080396.10
Chromosome 3CM059151.1=NC_080397.10
Chromosome 4CM059152.1=NC_080398.10
Chromosome 5CM059153.1=NC_080399.10
Chromosome 6CM059154.1=NC_080400.10
Chromosome 7CM059155.1=NC_080401.10
Chromosome 8CM059156.1=NC_080402.10
Chromosome 9CM059157.1=NC_080403.10
Chromosome 10CM059158.1=NC_080404.10
Chromosome 11CM059159.1=NC_080405.10
Chromosome 12CM059160.1=NC_080406.10
Chromosome 13CM059161.1=NC_080407.10
Chromosome 14CM059162.1=NC_080408.10
Chromosome 15CM059163.1=NC_080409.10
Chromosome 16CM059164.1=NC_080410.10
Chromosome 17CM059165.1=NC_080411.10
Chromosome 18CM059166.1=NC_080412.10
Chromosome 19CM059167.1=NC_080413.10
Chromosome 20CM059168.1=NC_080414.10
Chromosome 21CM059169.1=NC_080415.10
Chromosome 22CM059170.1=NC_080416.10
unplacedn/an/an/a87

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,326,793,2831091,326,793,10359,287,28990
Chromosome 185,101,349185,101,32985,101,34910
Chromosome 278,597,127178,597,12778,597,12700
Chromosome 367,622,709167,622,68967,622,70910
Chromosome 466,809,286166,809,24666,809,28620
Chromosome 564,136,623164,136,62364,136,62300
Chromosome 663,138,654163,138,65463,138,65400
Chromosome 761,090,252161,090,25261,090,25200
Chromosome 860,245,081160,245,08160,245,08100
Chromosome 959,712,696159,712,69659,712,69600
Chromosome 1059,287,289159,287,28959,287,28900
Chromosome 1159,038,327159,038,32759,038,32700
Chromosome 1258,985,565158,985,52558,985,56520
Chromosome 1356,773,618156,773,59856,773,61810
Chromosome 1456,274,649156,274,64956,274,64900
Chromosome 1555,217,766155,217,76655,217,76600
Chromosome 1653,234,536153,234,49653,234,53620
Chromosome 1750,297,477150,297,47750,297,47700
Chromosome 1848,205,108148,205,10848,205,10800
Chromosome 1945,231,076145,231,07645,231,07600
Chromosome 2041,603,256141,603,25641,603,25600
Chromosome 2141,219,710141,219,71041,219,71000
Chromosome 2238,588,721138,588,72138,588,72100
unplaced56,382,4088756,382,4084,252,11500